SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000168
Gene Symbol: GLI3
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.41972624C>T COSM3638707 TCGA-EE-A2GC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-218-2-3p gcagaAACCATatgt CAUGGUUC m6b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-29b-2-5p gcaGAAACCAtatgt CUGGUUUC m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-584-5p gcagaAACCATAtgt UUAUGGUU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-758-5p gcagaAACCATatgt GAUGGUUG m6b Disrupted HPRO6_71984_G85976.1_42012202

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41972613C>G COSM4771773 GC_314T-GC_314N [stomach][NS][carcinoma][diffuse_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3692-3p atgTGTGGAAaatcc GUUCCACA m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-507 atgtGTGCAAAAtcc UUUUGCAC m8a Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-557 atgtGTGCAAAatcc GUUUGCAC m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-8064 atGTGTGCaaaatcc AGCACACU m6b Disrupted HPRO6_71984_G85976.1_42012202

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41972606C>T COSM1698606 YULAN [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1290 cAAAATCCcaggctg UGGAUUUU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-4293 caaaatcTCAGGCTg CAGCCUGA m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-4324 caaaaTCTCAGGctg CCCUGAGA m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-5089-5p caaAATCCCAggctg GUGGGAUU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-5186 caaAATCTCaggctg AGAGAUUG m6b Created HPRO6_71984_G85976.1_42012202
hsa-miR-619-5p caaaATCCCAGgctg GCUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-6506-5p caaaATCCCAGgctg ACUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-661 caaaatCCCAGGCtg UGCCUGGG m7b Disrupted HPRO6_71984_G85976.1_42012202

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41972603G>T COSM380653 LUAD-RT-S01721 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-3p aatcccATGCTGCac AGCAGCAU m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-107 aatcccATGCTGCac AGCAGCAU m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-4310 aatcccATGCTGCac GCAGCAUU m7a Created HPRO6_71984_G85976.1_42012202
hsa-miR-619-5p aATCCCAGgctgcac GCUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-6506-5p aATCCCAGgctgcac ACUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-661 aatCCCAGGCtgcac UGCCUGGG m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-7156-3p aatcccaGGCTGCAc CUGCAGCC m7b Disrupted HPRO6_71984_G85976.1_42012202

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41972603G>A COSM3950514 2296_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-3p aatcccaAGCTGCAc UUGCAGCU m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-4453 aatcCCAAGCTgcac GAGCUUGG m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-4538 aatcCCAAGCTgcac GAGCUUGG m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-5047 aatcccaAGCTGCAc UUGCAGCU m7b Created HPRO6_71984_G85976.1_42012202
hsa-miR-619-5p aATCCCAGgctgcac GCUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-6506-5p aATCCCAGgctgcac ACUGGGAU m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-661 aatCCCAGGCtgcac UGCCUGGG m7b Disrupted HPRO6_71984_G85976.1_42012202
hsa-miR-7156-3p aatcccaGGCTGCAc CUGCAGCC m7b Disrupted HPRO6_71984_G85976.1_42012202

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964788C>T COSM4362391 LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1288-3p aggGCAGTCCcatcc UGGACUGC m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-185-3p agggCAGCCCCatcc AGGGGCUG m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-18a-3p AGGGCAGTcccatcc ACUGCCCU m8a Created HPRO6_71983_G85975.1_42004369
hsa-miR-3199 agggCAGTCCCatcc AGGGACUG m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-365a-5p agggcAGTCCCatcc AGGGACUU m6b Created HPRO6_71983_G85975.1_42004369
hsa-miR-365b-5p agggcAGTCCCatcc AGGGACUU m6b Created HPRO6_71983_G85975.1_42004369
hsa-miR-3675-5p agggcaGCCCCATcc UAUGGGGC m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-4492 agggCAGCCCCatcc GGGGCUGG m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-4675 agggCAGCCCCatcc GGGGCUGU m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-5002-3p agGGCAGTCccatcc UGACUGCC m7b (m6b->m7b) HPRO6_71983_G85975.1_42004369
hsa-miR-6829-5p aggGCAGCCCcatcc UGGGCUGC m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-762 agggCAGCCCCatcc GGGGCUGG m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-8052 agggCAGTCCCatcc CGGGACUG m7b Created HPRO6_71983_G85975.1_42004369

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964787C>T COSM4494185 CSCC-11-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-3p gggCAGCCCCatccg AGGGGCUG m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-22-3p gGGCAGCTccatccg AAGCUGCC m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-3675-5p gggcaGCCCCATccg UAUGGGGC m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-4492 gggCAGCCCCatccg GGGGCUGG m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-4534 gggcagCTCCATCCg GGAUGGAG m8a Created HPRO6_71983_G85975.1_42004369
hsa-miR-4633-3p gggcAGCTCCatccg AGGAGCUA m6b Created HPRO6_71983_G85975.1_42004369
hsa-miR-4675 gggCAGCCCCatccg GGGGCUGU m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-558 ggGCAGCTCcatccg UGAGCUGC m7b (m6b->m7b) HPRO6_71983_G85975.1_42004369
hsa-miR-6500-5p gggcAGCTCCatccg AGGAGCUA m6b Created HPRO6_71983_G85975.1_42004369
hsa-miR-6829-5p ggGCAGCCCcatccg UGGGCUGC m7b (m7b->m6b) HPRO6_71983_G85975.1_42004369
hsa-miR-6874-5p gggcAGCTCCATccg AUGGAGCU m8a Created HPRO6_71983_G85975.1_42004369
hsa-miR-762 gggCAGCCCCatccg GGGGCUGG m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-8082 gggcagCTCCATCcg UGAUGGAG m7b Created HPRO6_71983_G85975.1_42004369

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964781C>A COSM1549862 TCGA-69-7765-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8075 cccCATCAGCtgtgc UGCUGAUG m7b Created HPRO6_71983_G85975.1_42004369

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964780G>A COSM1089631 TCGA-D1-A17H-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-128-3p cccatcCACTGTGct UCACAGUG m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-216a-3p cccatcCACTGTGct UCACAGUG m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-3681-3p cccatcCACTGTGct ACACAGUG m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-3681-5p cccATCCACTgtgct UAGUGGAU m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-3691-5p ccCATCCACTgtgct AGUGGAUG m8a Created HPRO6_71983_G85975.1_42004369
hsa-miR-432-3p cCCATCCActgtgct CUGGAUGG m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-6849-5p cccATCCACTgtgct GAGUGGAU m7b Created HPRO6_71983_G85975.1_42004369
Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964777G>A COSM4435553 449 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964771T>C COSM4687140 T3152 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2278 tgTGCTCTaatctgc GAGAGCAG m6b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-6081 tgTGCTCCaatctgc AGGAGCAG m6b Created HPRO6_71983_G85975.1_42004369
hsa-miR-6874-5p tgtGCTCCAatctgc AUGGAGCU m6b Created HPRO6_71983_G85975.1_42004369

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41964762G>T COSM171495 TCGA-AG-A036-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1184 atCTGCAGaattact CCUGCAGC m6b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-1205 atCTGCAGAattact UCUGCAGG m7a (m7a->m6a) HPRO6_71983_G85975.1_42004369
hsa-miR-1273h-3p aTCTGCAGaattact CUGCAGAC m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-17-3p atCTGCAGaattact ACUGCAGU m6b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-3158-5p aTCTGCAGaattact CCUGCAGA m7b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-3678-3p aTCTGCAGaattact CUGCAGAG m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-4778-5p atctgCAGAATTact AAUUCUGU m7a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-491-3p atcTGCATAAttact CUUAUGCA m7b Created HPRO6_71983_G85975.1_42004369
hsa-miR-544a atcTGCAGAATtact AUUCUGCA m8a Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-5571-5p atctgcAGAATTact CAAUUCUC m6b Disrupted HPRO6_71983_G85975.1_42004369
hsa-miR-944 atctgcATAATTact AAAUUAUU m6b Created HPRO6_71983_G85975.1_42004369

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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