SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000168
Gene Symbol: GLI3
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.41965018C>A COSM3880988 TCGA-BR-6457-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7b-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7c-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7e-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7f-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7g-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-let-7i-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-miR-1258 gctaCCTAACacatc AGUUAGGA m6b Created HPKTA_57434_G62081.1_42004605
hsa-miR-1294 gctACCTCACAcatc UGUGAGGU m8a Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-196a-5p gCTACCTAacacatc UAGGUAGU m7a Created HPKTA_57434_G62081.1_42004605
hsa-miR-196b-5p gCTACCTAacacatc UAGGUAGU m7a Created HPKTA_57434_G62081.1_42004605
hsa-miR-3152-3p gctacCTAACACAtc UGUGUUAG m8a Created HPKTA_57434_G62081.1_42004605
hsa-miR-4316 gctaCCTCACacatc GGUGAGGC m6b Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-4500 gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605
hsa-miR-6509-5p gcTACCTAAcacatc AUUAGGUA m7b (m6b->m7b) HPKTA_57434_G62081.1_42004605
hsa-miR-6818-5p gctaccTCACACAtc UUGUGUGA m7b Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-6831-5p gCTACCTAacacatc UAGGUAGA m7a Created HPKTA_57434_G62081.1_42004605
hsa-miR-98-5p gCTACCTCAcacatc UGAGGUAG m8a (m8a->m7a) HPKTA_57434_G62081.1_42004605

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41965012T>C COSM374568 LUAD-NYU408 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3650 tcACACACCaacatc AGGUGUGU m7b (m6b->m7b) HPKTA_57434_G62081.1_42004605
hsa-miR-4781-3p tcacacaCCAACATc AAUGUUGG m7b Created HPKTA_57434_G62081.1_42004605
hsa-miR-6867-5p tCACACACcaacatc UGUGUGUG m7b Created HPKTA_57434_G62081.1_42004605

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41965004T>C COSM3950510 742_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3165 caacATCCACCaagg AGGUGGAU m7b Created HPKTA_57434_G62081.1_42004605
hsa-miR-3529-5p caacaTCTACCaagg AGGUAGAC m6b Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-3691-5p caaCATCCACcaagg AGUGGAUG m7b Created HPKTA_57434_G62081.1_42004605
hsa-miR-376a-2-5p caacATCTACCaagg GGUAGAUU m7a Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-376c-5p caacATCCACCaagg GGUGGAUA m7a Created HPKTA_57434_G62081.1_42004605
hsa-miR-379-5p caacaTCTACCAagg UGGUAGAC m7a Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-4451 caacaTCTACCAagg UGGUAGAG m7a Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-4650-3p caacaTCTACCaagg AGGUAGAA m6b Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-576-3p caACATCTaccaagg AAGAUGUG m6b Disrupted HPKTA_57434_G62081.1_42004605
hsa-miR-6880-5p caacaTCCACCAagg UGGUGGAG m7a Created HPKTA_57434_G62081.1_42004605
hsa-miR-8071 caacaTCCACCaagg CGGUGGAC m6b Created HPKTA_57434_G62081.1_42004605

Mutation Mutation ID Sample Name Cancer Type
chr7:g.41961229C>A COSN9989192 AOCS-155-3-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser