SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000147
Gene Symbol: FUCA1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.23846113C>G COSM3486128 TCGA-DA-A3F5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-208b-3p atggaGTCTTAaacc AUAAGACG m6b Disrupted HPKTA_4064_G4338.1_24172584
hsa-miR-4432 atgGAGTCTTaaacc AAAGACUC m7b Disrupted HPKTA_4064_G4338.1_24172584
hsa-miR-208a-3p atggaGTCTTAaacc AUAAGACG m6b Disrupted HPKTA_4064_G4338.1_24172584
hsa-miR-499a-5p atggAGTCTTAAacc UUAAGACU m8a Disrupted HPKTA_4064_G4338.1_24172584
hsa-miR-8087 atggAGTCTTaaacc GAAGACUU m6b Disrupted HPKTA_4064_G4338.1_24172584
hsa-miR-200a-3p atggAGTGTTAaacc UAACACUG m7a Created HPKTA_4064_G4338.1_24172584
hsa-miR-141-3p atggAGTGTTAaacc UAACACUG m7a Created HPKTA_4064_G4338.1_24172584

Mutation Mutation ID Sample Name Cancer Type
chr1:g.23845394C>A COSN1100944 HCC67T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1256 gcttactCAATGCCt AGGCAUUG m7b Disrupted HPKTA_4063_G4337.1_24171892
hsa-miR-6869-5p gctTACTCAatgcct GUGAGUAG m6b Disrupted HPKTA_4063_G4337.1_24171892

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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