SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000144
Gene Symbol: FXN

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.69072811A>G COSN14972511 LP6005409-DNA_E01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4731-5p agaCCCCAGCttcat UGCUGGGG m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-320e agaccCCAGCTTcat AAAGCUGG m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-7843-3p agaccccGGCTTCAt AUGAAGCC m7b Created HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-7155-5p agACCCCAGcttcat UCUGGGGU m7b (m7b->m6b) HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-127-5p agaccccAGCTTCAt CUGAAGCU m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267

Mutation Mutation ID Sample Name Cancer Type
chr9:g.69072810C>T COSN14953500 LP6005409-DNA_E01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4731-5p aagaCCCCAGCttca UGCUGGGG m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-320e aagaccCCAGCTTca AAAGCUGG m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-7704 aaGACCCCagcttca CGGGGUCG m6b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-7155-5p aagACCCCAGcttca UCUGGGGU m7b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267
hsa-miR-615-5p aaGACCCCagcttca GGGGGUCC m6b Disrupted HHKTA_15264_NM_181425|909|948|4.67293763358977|0.189771854624267

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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