SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000098
Gene Symbol: CPT2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.53210735A>C COSM191479 TCGA-AA-3555-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1265 tttgatACATCCTtt CAGGAUGU m7b Created HPCB1_563_G716.1_53676432
hsa-miR-3171 tttgATACATCcttt AGAUGUAU m7b Created HPCB1_563_G716.1_53676432
hsa-miR-374a-3p ttTGATAAatccttt CUUAUCAG m6b Disrupted HPCB1_563_G716.1_53676432
hsa-miR-541-5p tttgataAATCCTTt AAAGGAUU m7b Disrupted HPCB1_563_G716.1_53676432

Mutation Mutation ID Sample Name Cancer Type
chr1:g.53210360C>A COSM4674502 T3262 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6839-3p cccAAACCCAgtcgg UUGGGUUU m7b Disrupted HPCB1_561_G714.1_53676017
hsa-miR-892a cccaaACACAGTcgg CACUGUGU m7b Created HPCB1_561_G714.1_53676017
hsa-miR-5087 ccCAAACCCagtcgg GGGUUUGU m7a (m7a->m6a) HPCB1_561_G714.1_53676017

Mutation Mutation ID Sample Name Cancer Type
chr1:g.53210347C>T COSM160190 PD4123a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-1-3p cTCAACTCgtttacc AGAGUUGA m7b Disrupted HPCB1_561_G714.1_53676017
hsa-miR-30a-5p ctcaactTGTTTACc UGUAAACA m7b Created HPCB1_561_G714.1_53676017
hsa-miR-30b-5p ctcaactTGTTTACc UGUAAACA m7b Created HPCB1_561_G714.1_53676017
hsa-miR-30c-5p ctcaactTGTTTACc UGUAAACA m7b Created HPCB1_561_G714.1_53676017
hsa-miR-30d-5p ctcaactTGTTTACc UGUAAACA m7b Created HPCB1_561_G714.1_53676017
hsa-miR-30e-5p ctcaactTGTTTACc UGUAAACA m7b Created HPCB1_561_G714.1_53676017

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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