SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000033
Gene Symbol: ABCD1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729357G>A COSM4885310 OSCC-GB_00640111 [upper_aerodigestive_tract][mouth][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4649-3p gcGCCTCAGgcctgc UCUGAGGC m7b (m6b->m7b) HHFKP_155728_cluster-24131_2_56
hsa-miR-4650-5p gcgcctcAGGCCTGc UCAGGCCU m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-4747-3p gcgcctCGGGCCTgc AAGGCCCG m7b Disrupted HHFKP_155728_cluster-24131_2_56
hsa-miR-544b gcgCCTCAGGcctgc ACCUGAGG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-6765-5p gCGCCTCAggcctgc GUGAGGCG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-4649-3p gcGCCTCAGgcctgc UCUGAGGC m7b (m6b->m7b) HHFKP_155728_cluster-24131_2_56
hsa-miR-4650-5p gcgcctcAGGCCTGc UCAGGCCU m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-4747-3p gcgcctCGGGCCTgc AAGGCCCG m7b Disrupted HHFKP_155728_cluster-24131_2_56
hsa-miR-544b gcgCCTCAGGcctgc ACCUGAGG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-6765-5p gCGCCTCAggcctgc GUGAGGCG m7b Created HHFKP_155728_cluster-24131_2_56

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729355T>C COSM278550 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1538 gagcgccCCGGGCCt CGGCCCGG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-3197 gaGCGCCTCgggcct GGAGGCGC m7b (m7b->m6b) HHFKP_155728_cluster-24131_2_56
hsa-miR-4532 gagcgCCCCGGGcct CCCCGGGG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-4745-3p gagcgccCCGGGCCt UGGCCCGG m7b Created HHFKP_155728_cluster-24131_2_56
hsa-miR-6784-5p gagcGCCCCGGgcct GCCGGGGC m7b Created HHFKP_155728_cluster-24131_2_56

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153729351C>T COSM4107809 TCGA-HU-A4GT-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3197 tgtggaGCGCCTCgg GGAGGCGC m7b Disrupted HHFKP_155728_cluster-24131_2_56
hsa-miR-3197 tgtggaGCGCCTCgg GGAGGCGC m7b Disrupted HHFKP_155728_cluster-24131_2_56

Mutation Mutation ID Sample Name Cancer Type
chrX:g.153725532G>A COSM4658394 T96 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1343-3p ctgtgCCAGGAGacg CUCCUGGG m7a Created HHFKP_155727_cluster-24131_1_31
hsa-miR-1976 ctgtgcCAGGAGacg CCUCCUGC m6b Created HHFKP_155727_cluster-24131_1_31
hsa-miR-221-5p ctgTGCCAGGagacg ACCUGGCA m7b Created HHFKP_155727_cluster-24131_1_31
hsa-miR-3653-5p ctgtgcCAGGAGacg CCUCCUGA m6b Created HHFKP_155727_cluster-24131_1_31
hsa-miR-4720-5p ctgTGCCAGGagacg CCUGGCAU m7a Created HHFKP_155727_cluster-24131_1_31
hsa-miR-8073 ctgTGCCAGGagacg ACCUGGCA m7b Created HHFKP_155727_cluster-24131_1_31

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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