SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001017415
Gene Symbol: USP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450957C>CT COSM248232 P04-1243 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548i ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548am-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ap-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548aq-5p ctccTTACTTTgctat GAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ar-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548as-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548au-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ay-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548b-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548bb-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548c-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548d-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548h-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ak ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548j-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548o-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548w ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548y ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-559 ctccTTACTTTgctat UAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ae-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-3973 ctcctTACTTTGctat ACAAAGUA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548a-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ab ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625
hsa-miR-548ad-5p ctccTTACTTTgctat AAAAGUAA m7b Created HPRT3_460_G622.1_62916625

Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450829G>A COSM1240616 ESO-859 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-297 ttCATACATagtgca AUGUAUGU m7a (m6a->m7a) HPRT3_459_G621.1_62916501
hsa-miR-3924 ttcATACATAgtgca AUAUGUAU m7b Created HPRT3_459_G621.1_62916501

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser