SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018259
Gene Symbol: TTC17
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.43493894G>A COSM926901 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1909-5p ggacGGCACTCtcct UGAGUGCC m7b Created HHFCT_28700_cluster-3435_28_15
hsa-miR-339-3p ggacGGCGCTCtcct UGAGCGCC m7b Disrupted HHFCT_28700_cluster-3435_28_15
hsa-miR-371a-3p ggaCGGCACTctcct AAGUGCCG m7b Created HHFCT_28700_cluster-3435_28_15
hsa-miR-4693-3p ggacggCACTCTCct UGAGAGUG m7b Created HHFCT_28700_cluster-3435_28_15
hsa-miR-5192 ggacggcACTCTCCt AGGAGAGU m7b Created HHFCT_28700_cluster-3435_28_15

Mutation Mutation ID Sample Name Cancer Type
chr11:g.43493880G>A COSM1268834 ESO-632 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7157-5p tAATGCTGAagaagg UCAGCAUU m8a (m8a->m7a) HHFCT_28700_cluster-3435_28_15
hsa-miR-4778-3p taatgctGAAGAAGg UCUUCUUC m7b Disrupted HHFCT_28700_cluster-3435_28_15
hsa-miR-374b-3p taaTGCTAAagaagg CUUAGCAG m6b Created HHFCT_28700_cluster-3435_28_15
hsa-miR-4310 tAATGCTGaagaagg GCAGCAUU m7b Disrupted HHFCT_28700_cluster-3435_28_15

Mutation Mutation ID Sample Name Cancer Type
chr11:g.43364028T>C COSN7008870 8031073 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4671-5p gccggtaTCTTCGGa ACCGAAGA m7b Disrupted HPTA4_578_G2753.1_43385573

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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