SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001042369
Gene Symbol: TROVE2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.193091634C>T COSN6016272 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-876-5p tGAAATCCtttctct UGGAUUUC m7b Disrupted HPCB3_954_G1321.1_193060751
hsa-miR-3167 tGAAATCCTttctct AGGAUUUC m8a (m8a->m7a) HPCB3_954_G1321.1_193060751
hsa-miR-541-5p tgaAATCCTTTctct AAAGGAUU m8a Disrupted HPCB3_954_G1321.1_193060751

Mutation Mutation ID Sample Name Cancer Type
chr1:g.193089402T>C COSN1423172 RK058_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6869-5p aactTACTCACattt GUGAGUAG m7a Disrupted HPCB3_952_G1319.1_193058536
hsa-miR-8066 aacttacTCACATTt CAAUGUGA m7b Disrupted HPCB3_952_G1319.1_193058536
hsa-miR-6759-5p aacttACCCACAttt UUGUGGGU m7b Created HPCB3_952_G1319.1_193058536
hsa-miR-1229-5p aactTACCCACattt GUGGGUAG m7a Created HPCB3_952_G1319.1_193058536
hsa-miR-299-3p aacttaCCCACATtt UAUGUGGG m7b Created HPCB3_952_G1319.1_193058536
hsa-miR-1225-5p aactTACCCACattt GUGGGUAC m7a Created HPCB3_952_G1319.1_193058536
hsa-miR-555 aaCTTACCCacattt AGGGUAAG m7b (m6b->m7b) HPCB3_952_G1319.1_193058536

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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