SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000594
Gene Symbol: TNF
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31577645G>T COSN4858769 tumor_4177376 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ao-3p attggGGTCTTaggg AAAGACCG m6b Created HPSEF_19275_G23257.1_31545429
hsa-miR-3943 attGGGGGCTtaggg UAGCCCCC m7b Disrupted HPSEF_19275_G23257.1_31545429
hsa-miR-3667-5p attgGGGTCTTaggg AAAGACCC m7b Created HPSEF_19275_G23257.1_31545429

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31577233T>G COSM3861698 TCGA-EQ-5647-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-202-3p ctgTACCTCatctac AGAGGUAU m6b Disrupted HPSLB_6287_G7670.1_31545015
hsa-miR-4458 ctgTACCTCatctac AGAGGUAG m6b Disrupted HPSLB_6287_G7670.1_31545015
hsa-let-7d-5p ctgTACCTCatctac AGAGGUAG m6b Disrupted HPSLB_6287_G7670.1_31545015

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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