SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0030739
Gene Symbol: TM9SF2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.99554380C>T COSM1128436 TCGA-EJ-5510-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1911-3p cccttGCCTGGTatt CACCAGGC m7b Disrupted HHFCT_43721_uc001voj.1_27_10
hsa-miR-4645-5p ccctTGCCTGGTatt ACCAGGCA m8a Disrupted HHFCT_43721_uc001voj.1_27_10
hsa-miR-4673 ccctTGCCTGGtatt UCCAGGCA m7b Disrupted HHFCT_43721_uc001voj.1_27_10
hsa-miR-4742-5p cccTTGCCTGgtatt UCAGGCAA m7b Disrupted HHFCT_43721_uc001voj.1_27_10
hsa-miR-6753-5p cccttgCCTGGTatt CACCAGGG m6b Disrupted HHFCT_43721_uc001voj.1_27_10
hsa-miR-1911-3p cccttGCCTGGTatt CACCAGGC m7b Disrupted HHRBC_3857_BC3-2of3-SCL_5197
hsa-miR-4645-5p ccctTGCCTGGTatt ACCAGGCA m8a Disrupted HHRBC_3857_BC3-2of3-SCL_5197
hsa-miR-4673 ccctTGCCTGGtatt UCCAGGCA m7b Disrupted HHRBC_3857_BC3-2of3-SCL_5197
hsa-miR-4742-5p cccTTGCCTGgtatt UCAGGCAA m7b Disrupted HHRBC_3857_BC3-2of3-SCL_5197
hsa-miR-6753-5p cccttgCCTGGTatt CACCAGGG m6b Disrupted HHRBC_3857_BC3-2of3-SCL_5197

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99554372G>T COSM1368217 TCGA-AD-6964-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3158-3p acacgAAGCCCTTgc AAGGGCUU m8a Disrupted HHFCT_43721_uc001voj.1_27_10

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552288C>G COSM372740 LUAD-NYU284 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4257 tgtgCCTCTGacgtt CCAGAGGU m6b Disrupted HHFCT_43720_uc001voj.1_26_18
hsa-miR-4269 tGTGCCTGtgacgtt GCAGGCAC m7b Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-4438 tgtGCCTGTGacgtt CACAGGCU m7a Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-513a-5p tgtgCCTGTGAcgtt UUCACAGG m7b Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-6715b-5p tGTGCCTGTgacgtt ACAGGCAC m8a (m7a->m8a) HHFCT_43720_uc001voj.1_26_18
hsa-miR-6847-5p tgtgCCTCTGacgtt ACAGAGGA m6b Disrupted HHFCT_43720_uc001voj.1_26_18
hsa-miR-4257 tgtgCCTCTGacgtt CCAGAGGU m6b Disrupted HPSEF_6469_G7745.1_100204550
hsa-miR-4269 tGTGCCTGtgacgtt GCAGGCAC m7b Created HPSEF_6469_G7745.1_100204550
hsa-miR-4438 tgtGCCTGTGacgtt CACAGGCU m7a Created HPSEF_6469_G7745.1_100204550
hsa-miR-513a-5p tgtgCCTGTGAcgtt UUCACAGG m7b Created HPSEF_6469_G7745.1_100204550
hsa-miR-6715b-5p tGTGCCTGTgacgtt ACAGGCAC m8a (m7a->m8a) HPSEF_6469_G7745.1_100204550
hsa-miR-6847-5p tgtgCCTCTGacgtt ACAGAGGA m6b Disrupted HPSEF_6469_G7745.1_100204550

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552280C>T COSM4045643 TCGA-BR-4184-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4719 tgcatATTTGTGcct UCACAAAU m7b Created HHFCT_43720_uc001voj.1_26_18
Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552278A>G COSM1628964 RK084_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552274G>A COSM1368215 TCGA-AU-3779-01 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-190a-5p tggttctACATATCt UGAUAUGU m7b Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-190b tggttctACATATCt UGAUAUGU m7b Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-298 tggTTCTGCatatct AGCAGAAG m6b Disrupted HHFCT_43720_uc001voj.1_26_18
hsa-miR-3668 tggtTCTACATatct AAUGUAGA m7b Created HHFCT_43720_uc001voj.1_26_18

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552261G>T COSM3710993 26T [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4475 catattGTCCCTTtg CAAGGGAC m7b Created HHFCT_43720_uc001voj.1_26_18
hsa-miR-6895-5p catatTGGCCCTttg CAGGGCCA m7b Disrupted HHFCT_43720_uc001voj.1_26_18
hsa-miR-7845-5p catatTGTCCCTTtg AAGGGACA m8a Created HHFCT_43720_uc001voj.1_26_18

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552225G>A COSM1171997 ESO14T [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1267 atctTCAACAGctat CCUGUUGA m7b Created HHFKP_41895_uc001voj.1_18_20
hsa-miR-22-3p atcttcaGCAGCTat AAGCUGCC m6b Disrupted HHFKP_41895_uc001voj.1_18_20
hsa-miR-653-5p atcTTCAACAgctat GUGUUGAA m7b Created HHFKP_41895_uc001voj.1_18_20
hsa-miR-93-3p atctTCAGCAGctat ACUGCUGA m7b Disrupted HHFKP_41895_uc001voj.1_18_20
hsa-miR-1267 atctTCAACAGctat CCUGUUGA m7b Created HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826
hsa-miR-22-3p atcttcaGCAGCTat AAGCUGCC m6b Disrupted HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826
hsa-miR-653-5p atcTTCAACAgctat GUGUUGAA m7b Created HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826
hsa-miR-93-3p atctTCAGCAGctat ACUGCUGA m7b Disrupted HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99552216G>C COSM3466849 TCGA-FS-A1ZM-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1248 gggAGAAGGatcttc ACCUUCUU m6b Disrupted HHFKP_41895_uc001voj.1_18_20
hsa-miR-629-3p GGGAGAACgatcttc GUUCUCCC m8a Created HHFKP_41895_uc001voj.1_18_20
hsa-miR-6868-3p gggAGAAGGAtcttc UUCCUUCU m7b Disrupted HHFKP_41895_uc001voj.1_18_20
hsa-miR-1248 gggAGAAGGatcttc ACCUUCUU m6b Disrupted HHHNA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-629-3p GGGAGAACgatcttc GUUCUCCC m8a Created HHHNA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-6868-3p gggAGAAGGAtcttc UUCCUUCU m7b Disrupted HHHNA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-1248 gggAGAAGGatcttc ACCUUCUU m6b Disrupted HHHSA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-629-3p GGGAGAACgatcttc GUUCUCCC m8a Created HHHSA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-6868-3p gggAGAAGGAtcttc UUCCUUCU m7b Disrupted HHHSA_6584_TM9SF2|NM_004800|exon_CDS|-7.42192451776097|-0.919867265187667
hsa-miR-1248 gggAGAAGGatcttc ACCUUCUU m6b Disrupted HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826
hsa-miR-629-3p GGGAGAACgatcttc GUUCUCCC m8a Created HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826
hsa-miR-6868-3p gggAGAAGGAtcttc UUCCUUCU m7b Disrupted HHKTA_18562_AK093507|1195|1234|3.89411469465814|1.97169681511826

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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