SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_004800
Gene Symbol: TM9SF2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501754GA>G COSM1368213 LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4659a-3p cgacGAAGAAAaaaag UUUCUUCU m7a Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-4659b-3p cgacGAAGAAAaaaag UUUCUUCU m7a Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-6875-3p cgacGAAGAAaaaaag AUUCUUCC m6b Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-4659a-3p cgacGAAGAAAaaaag UUUCUUCU m7a Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-4659b-3p cgacGAAGAAAaaaag UUUCUUCU m7a Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-6875-3p cgacGAAGAAaaaaag AUUCUUCC m6b Disrupted HHFKP_41881_uc001voj.1_3_44

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501751G>A COSM3793071 TCGA-E7-A3X6-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4659a-3p ctgcgacGAAGAAAa UUUCUUCU m7a Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-4659b-3p ctgcgacGAAGAAAa UUUCUUCU m7a Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-6844 ctgcgACAAAGAAaa UUCUUUGU m8a Created HHFCT_43700_uc001voj.1_4_9
hsa-miR-6875-3p ctgcgacGAAGAAaa AUUCUUCC m6b Disrupted HHFCT_43700_uc001voj.1_4_9
hsa-miR-1181 ctGCGACGaagaaaa CCGUCGCC m6b Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-4659a-3p ctgcgacGAAGAAAa UUUCUUCU m7a Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-4659b-3p ctgcgacGAAGAAAa UUUCUUCU m7a Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-6844 ctgcgACAAAGAAaa UUCUUUGU m8a Created HHFKP_41881_uc001voj.1_3_44
hsa-miR-6875-3p ctgcgacGAAGAAaa AUUCUUCC m6b Disrupted HHFKP_41881_uc001voj.1_3_44

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501735C>T COSM944956 TCGA-AP-A0LT-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6499-5p tgGCGCCCGtcaact UCGGGCGC m7b (m7b->m6b) HHFCT_43699_uc001voj.1_3_21
hsa-miR-6499-5p tgGCGCCCGtcaact UCGGGCGC m7b (m7b->m6b) HHFKP_41881_uc001voj.1_3_44

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501702G>A COSM550709 TCGA-50-5044-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1469 cGCGCCGAagcggcg CUCGGCGC m7b Created HHFCT_43699_uc001voj.1_3_21
hsa-miR-6743-3p cgcgccgGAGCGGCg AGCCGCUC m7b Disrupted HHFCT_43699_uc001voj.1_3_21
hsa-miR-1469 cGCGCCGAagcggcg CUCGGCGC m7b Created HHFKP_41881_uc001voj.1_3_44
hsa-miR-6743-3p cgcgccgGAGCGGCg AGCCGCUC m7b Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-1469 cGCGCCGAagcggcg CUCGGCGC m7b Created HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-6743-3p cgcgccgGAGCGGCg AGCCGCUC m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501695C>G COSM1735668 ACINAR01 [pancreas][NS][carcinoma][acinar_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2277-5p cctggCCCGCGCcgg AGCGCGGG m7b Disrupted HHFCT_43699_uc001voj.1_3_21
hsa-miR-3195 cctggCCGGCGCcgg CGCGCCGG m7b Created HHFCT_43699_uc001voj.1_3_21
hsa-miR-4640-5p cCTGGCCCgcgccgg UGGGCCAG m7b Disrupted HHFCT_43699_uc001voj.1_3_21
hsa-miR-4726-5p cCTGGCCCgcgccgg AGGGCCAG m7b Disrupted HHFCT_43699_uc001voj.1_3_21
hsa-miR-2277-5p cctggCCCGCGCcgg AGCGCGGG m7b Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-3195 cctggCCGGCGCcgg CGCGCCGG m7b Created HHFKP_41881_uc001voj.1_3_44
hsa-miR-4640-5p cCTGGCCCgcgccgg UGGGCCAG m7b Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-4726-5p cCTGGCCCgcgccgg AGGGCCAG m7b Disrupted HHFKP_41881_uc001voj.1_3_44
hsa-miR-2277-5p cctggCCCGCGCcgg AGCGCGGG m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-3195 cctggCCGGCGCcgg CGCGCCGG m7b Created HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-4640-5p cCTGGCCCgcgccgg UGGGCCAG m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-4726-5p cCTGGCCCgcgccgg AGGGCCAG m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-2277-5p cctggCCCGCGCcgg AGCGCGGG m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-3195 cctggCCGGCGCcgg CGCGCCGG m7b Created HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-4640-5p cCTGGCCCgcgccgg UGGGCCAG m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-4726-5p cCTGGCCCgcgccgg AGGGCCAG m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-2277-5p cctggCCCGCGCcgg AGCGCGGG m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-3195 cctggCCGGCGCcgg CGCGCCGG m7b Created HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-4640-5p cCTGGCCCgcgccgg UGGGCCAG m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-4726-5p cCTGGCCCgcgccgg AGGGCCAG m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562

Mutation Mutation ID Sample Name Cancer Type
chr13:g.99501656T>C COSM3667255 CHC1035T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-15b-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-16-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-195-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-196b-3p cgGCTGTCGctgctg UCGACAGC m7b (m6b->m7b) HHFKP_41880_uc001voj.1_2_11
hsa-miR-424-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-497-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-503-5p cggctgtCGCTGCTg UAGCAGCG m7b Created HHFKP_41880_uc001voj.1_2_11
hsa-miR-6838-5p cggctgtTGCTGCTg AAGCAGCA m7b Disrupted HHFKP_41880_uc001voj.1_2_11
hsa-miR-15a-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-15b-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-16-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-195-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-196b-3p cgGCTGTCGctgctg UCGACAGC m7b (m6b->m7b) HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-424-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-497-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-503-5p cggctgtCGCTGCTg UAGCAGCG m7b Created HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-6838-5p cggctgtTGCTGCTg AAGCAGCA m7b Disrupted HHHNA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-15a-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-15b-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-16-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-195-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-196b-3p cgGCTGTCGctgctg UCGACAGC m7b (m6b->m7b) HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-424-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-497-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-503-5p cggctgtCGCTGCTg UAGCAGCG m7b Created HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-6838-5p cggctgtTGCTGCTg AAGCAGCA m7b Disrupted HHHSA_6581_TM9SF2|NM_004800|exon_CDS|-5.45732284581583|1.23653800419486
hsa-miR-15a-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-15b-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-16-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-195-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-196b-3p cgGCTGTCGctgctg UCGACAGC m7b (m6b->m7b) HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-424-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-497-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-503-5p cggctgtCGCTGCTg UAGCAGCG m7b Created HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-6838-5p cggctgtTGCTGCTg AAGCAGCA m7b Disrupted HHRBL_4408_BCBL1-2of3-SCL_5562
hsa-miR-15a-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-15b-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-16-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-195-5p cggctgtTGCTGCTg UAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-196b-3p cgGCTGTCGctgctg UCGACAGC m7b (m6b->m7b) HPKMA_4069_G4770.1_100153909
hsa-miR-424-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-497-5p cggctgtTGCTGCTg CAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909
hsa-miR-503-5p cggctgtCGCTGCTg UAGCAGCG m7b Created HPKMA_4069_G4770.1_100153909
hsa-miR-6838-5p cggctgtTGCTGCTg AAGCAGCA m7b Disrupted HPKMA_4069_G4770.1_100153909

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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