SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000660
Gene Symbol: TGFB1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.41353004C>T COSM4639048 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-424-5p ctgctacTGCTGCTg CAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-195-5p ctgctacTGCTGCTg UAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-16-5p ctgctacTGCTGCTg UAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-15b-5p ctgctacTGCTGCTg UAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-15a-5p ctgctacTGCTGCTg UAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-6838-5p ctgctacTGCTGCTg AAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
hsa-miR-503-5p ctgctacCGCTGCTg UAGCAGCG m7b Disrupted HHFCT_76141_cluster-12387_8_17
hsa-miR-497-5p ctgctacTGCTGCTg CAGCAGCA m7b Created HHFCT_76141_cluster-12387_8_17
Mutation Mutation ID Sample Name Cancer Type
chr19:g.41352973C>A COSM439589 TCGA-E2-A14X-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.41352960G>A COSM1481113 TCGA-E9-A1R4-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1471 ggcCGCGGGactatc GCCCGCGU m6b Disrupted HHFKP_70706_cluster-12387_6_14
hsa-miR-4474-5p ggccgcGAGACTAtc UUAGUCUC m7b Created HHFKP_70706_cluster-12387_6_14
hsa-miR-5588-3p ggccgcGGGACTatc AAGUCCCA m6b Disrupted HHFKP_70706_cluster-12387_6_14

Mutation Mutation ID Sample Name Cancer Type
chr19:g.41352959G>A COSM4140675 AOCS-116-1-3 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5588-3p gccgcGGGACTatcc AAGUCCCA m6b Disrupted HHFKP_70706_cluster-12387_6_14
hsa-miR-937-3p gcCGCGGAactatcc AUCCGCGC m6b Created HHFKP_70706_cluster-12387_6_14

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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