SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001308157
Gene Symbol: SYT17
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224805G>A COSM3506671 TCGA-GN-A269-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-5p tcccCAAAAAGaact CUUUUUGC m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-22-5p tccccaaGAAGAACt AGUUCUUC m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4659a-3p tccccaAGAAGAAct UUUCUUCU m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4659b-3p tccccaAGAAGAAct UUUCUUCU m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4778-3p tccccAAGAAGAact UCUUCUUC m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-578 tcccCAAGAAGaact CUUCUUGU m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-635 tcCCCAAGaagaact ACUUGGGC m6b Disrupted HHFCT_58317_cluster-8431_12_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224800C>T COSM3506670 TCGA-EE-A2GR-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1270 aaagtTCTCCAagaa CUGGAGAU m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-146a-5p aaAGTTCTCcaagaa UGAGAACU m7b (m6b->m7b) HHFCT_58317_cluster-8431_12_8
hsa-miR-146b-5p aaAGTTCTCcaagaa UGAGAACU m7b (m6b->m7b) HHFCT_58317_cluster-8431_12_8
hsa-miR-2110 aaagTTCCCCAAgaa UUGGGGAA m8a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-3150a-3p aaagtTCCCCAagaa CUGGGGAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4260 aaagttCCCCAAGaa CUUGGGGC m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4271 aaagTTCCCCaagaa GGGGGAAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-432-5p aaagttCTCCAAGAa UCUUGGAG m8a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-4434 aaagTTCTCCaagaa AGGAGAAG m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-4471 aaAGTTCCCcaagaa UGGGAACU m7b (m7b->m6b) HHFCT_58317_cluster-8431_12_8
hsa-miR-450a-2-3p aaagtTCCCCAAgaa AUUGGGGA m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4516 aaagTTCTCCaagaa GGGAGAAG m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-4531 aaagTTCTCCAagaa AUGGAGAA m7b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-4725-3p aaagTTCCCCAagaa UGGGGAAG m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-5703 aaagTTCTCCaagaa AGGAGAAG m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-620 aaagtTCTCCAagaa AUGGAGAU m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-635 aaagttcCCCAAGaa ACUUGGGC m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6763-5p aaagtTCCCCAagaa CUGGGGAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6774-5p aaagttcCCCAAGaa ACUUGGGC m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6780b-5p aaagTTCCCCAagaa UGGGGAAG m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6810-5p aaagtTCCCCAagaa AUGGGGAC m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-7153-5p aaAGTTCTCcaagaa UGAGAACU m7b (m6b->m7b) HHFCT_58317_cluster-8431_12_8
hsa-miR-8059 aaAGTTCCCCaagaa GGGGAACU m8a Disrupted HHFCT_58317_cluster-8431_12_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224799C>T COSM3506669 TCGA-FS-A4F8-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2110 caaagTTCCCCAAga UUGGGGAA m8a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-3150a-3p caaagtTCCCCAaga CUGGGGAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4260 caaagttCCCCAAGa CUUGGGGC m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4271 caaagTTCCCCaaga GGGGGAAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4471 caaAGTTCCCcaaga UGGGAACU m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-450a-1-3p caaagtTTCCCAAga AUUGGGAA m7b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-450a-2-3p caaagtTCCCCAAga AUUGGGGA m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4668-5p caaagTTTCCCaaga AGGGAAAA m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-4725-3p caaagTTCCCCAaga UGGGGAAG m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6733-5p caaagTTTCCCAaga UGGGAAAG m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-6739-5p caaagTTTCCCAaga UGGGAAAG m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-6763-5p caaagtTCCCCAaga CUGGGGAG m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6780b-5p caaagTTCCCCAaga UGGGGAAG m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6810-5p caaagtTCCCCAaga AUGGGGAC m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-8059 caaAGTTCCCCaaga GGGGAACU m8a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-887-5p caaagttTCCCAAGa CUUGGGAG m7a Created HHFCT_58317_cluster-8431_12_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224788G>C COSM1323687 TCGA-20-1682-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-127-5p tccttcAGCTTCAaa CUGAAGCU m7b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-3928-5p tccttcAGCTTCAaa UGAAGCUC m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-493-3p tccttcACCTTCAaa UGAAGGUC m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-6126 tccttcaCCTTCAaa GUGAAGGC m6b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-6806-3p tccttcAGCTTCAaa UGAAGCUC m7a Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-6864-5p tccttcaCCTTCAAa UUGAAGGG m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-7843-3p tccttcaGCTTCAaa AUGAAGCC m6b Disrupted HHFCT_58317_cluster-8431_12_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224786C>T COSM4845819 TCGA-IR-A3LA-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1252-5p aaTCCTTCagcttca AGAAGGAA m6b Disrupted HHFCT_58317_cluster-8431_12_8
hsa-miR-4509 aatCCTTTAGcttca ACUAAAGG m7b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-541-5p AATCCTTTagcttca AAAGGAUU m8a Created HHFCT_58317_cluster-8431_12_8

Mutation Mutation ID Sample Name Cancer Type
chr16:g.19224786C>G COSM556805 TCGA-44-6776-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3928-5p aatccttGAGCTTCa UGAAGCUC m7b Created HHFCT_58317_cluster-8431_12_8
hsa-miR-561-5p aaTCCTTGAgcttca AUCAAGGA m7b (m6b->m7b) HHFCT_58317_cluster-8431_12_8
hsa-miR-6796-3p aatccttGAGCTTCa GAAGCUCU m7a Created HHFCT_58317_cluster-8431_12_8
hsa-miR-6806-3p aatccttGAGCTTCa UGAAGCUC m7b Created HHFCT_58317_cluster-8431_12_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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