SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007593
Gene Symbol: SMPD1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.6394245G>A COSM1226891 587338 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3607-5p ctcTCACATGgtcct GCAUGUGA m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-3619-3p ctctcacATGGTCCt GGGACCAU m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-591 ctctcaCATGGTCct AGACCAUG m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-3619-3p ctctcacATGGTCCt GGGACCAU m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-3607-5p ctcTCACATGgtcct GCAUGUGA m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-591 ctctcaCATGGTCct AGACCAUG m7b Created HPSEF_3643_G4366.1_6415471

Mutation Mutation ID Sample Name Cancer Type
chr11:g.6394233G>A COSM3752608 SNUH_G73_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3690 ctacTCCAGGagctc ACCUGGAC m6b Created HPSEF_3643_G4366.1_6415471
hsa-miR-4254 ctaCTCCAGGagctc GCCUGGAG m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-4254 ctaCTCCAGGagctc GCCUGGAG m7b Created HPSEF_3643_G4366.1_6415471
hsa-miR-3690 ctacTCCAGGagctc ACCUGGAC m6b Created HPSEF_3643_G4366.1_6415471
hsa-miR-1203 ctaCTCCGGGagctc CCCGGAGC m7a Disrupted HPSEF_3643_G4366.1_6415471
hsa-miR-1203 ctaCTCCGGGagctc CCCGGAGC m7a Disrupted HPSEF_3643_G4366.1_6415471

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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