SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001282429
Gene Symbol: SLC38A9
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.55695608G>T COSN15251027 LP6007420-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6814-5p tgCCTTGGGAtcctg UCCCAAGG m8a Disrupted HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261
hsa-miR-624-3p tgCCTTGTGatcctg CACAAGGU m7a (m6a->m7a) HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261
hsa-miR-513b-5p tgcCTTGTGAtcctg UUCACAAG m7b Created HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261
hsa-miR-4733-5p tgccTTGGGATcctg AAUCCCAA m7b Disrupted HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261
hsa-miR-4661-3p tgccttgGGATCCTg CAGGAUCC m7b Disrupted HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261
hsa-miR-4457 tgCCTTGTGAtcctg UCACAAGG m8a Created HHKTA_12493_NM_001007024|2277|2316|5.55993042515079|0.480772343261261

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55627951T>A COSM3617091 TCGA-EE-A2A2-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4760-5p AATCTAAAtattgtg UUUAGAUU m8a Created HHFCT_122591_cluster-18579_11_33
hsa-miR-338-5p aatctaaATATTGTg AACAAUAU m7b Created HHFCT_122591_cluster-18579_11_33
hsa-miR-195-3p aatctaAATATTGtg CCAAUAUU m7b Created HHFCT_122591_cluster-18579_11_33
hsa-miR-16-2-3p aatctaAATATTGtg CCAAUAUU m7b Created HHFCT_122591_cluster-18579_11_33

Mutation Mutation ID Sample Name Cancer Type
chr5:g.55627929C>T COSM3617090 TCGA-EE-A181-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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