SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_007105
Gene Symbol: SLC22A18AS
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.2903455T>G COSM1226030 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148b-5p aCAGAACTTacctgc AAGUUCUG m8a (m8a->m7a) HHFCT_27600_cluster-3289_1_16
hsa-miR-148a-5p acAGAACTTacctgc AAAGUUCU m7b (m7b->m6b) HHFCT_27600_cluster-3289_1_16

Mutation Mutation ID Sample Name Cancer Type
chr11:g.2903439C>A COSM4032269 TCGA-HU-A4GQ-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6884-3p ctacGTGATGGccgc CCCAUCAC m7b Created HHFCT_27600_cluster-3289_1_16
hsa-miR-4529-5p ctacgtGATGGCCgc AGGCCAUC m7b Created HHFCT_27600_cluster-3289_1_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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