SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_004170
Gene Symbol: SLC1A1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.4572296C>G COSM3657626 TCGA-FS-A4FB-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125b-2-3p gACTTGTGAttggaa UCACAAGU m8a (m7a->m8a) HHFCT_160254_cluster-22645_8_7
hsa-miR-4705 gacttGTGATTGgaa UCAAUCAC m7b Created HHFCT_160254_cluster-22645_8_7
hsa-miR-513b-5p gaCTTGTGAttggaa UUCACAAG m7b (m6b->m7b) HHFCT_160254_cluster-22645_8_7

Mutation Mutation ID Sample Name Cancer Type
chr9:g.4544690T>C COSM1240213 ESO-859 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3201 ttaattATATCCagc GGGAUAUG m6b Disrupted HPSD3_10097_G13692.1_4544679
hsa-miR-380-3p ttaATTACATccagc UAUGUAAU m7b Created HPSD3_10097_G13692.1_4544679

Mutation Mutation ID Sample Name Cancer Type
chr9:g.4544675T>G COSM1225997 587342 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-3p ctcatcATTTTGCca AGCAAAAU m7b Disrupted HPSD3_10097_G13692.1_4544679
hsa-miR-3662 ctcaTCATTTTgcca GAAAAUGA m7b Disrupted HPSD3_10097_G13692.1_4544679
hsa-miR-4470 ctcatcaGTTTGCCa UGGCAAAC m7b Created HPSD3_10097_G13692.1_4544679
hsa-miR-4502 cTCATCAGtttgcca GCUGAUGA m7b Created HPSD3_10097_G13692.1_4544679
hsa-miR-4698 ctcatCATTTTGcca UCAAAAUG m7b Disrupted HPSD3_10097_G13692.1_4544679
hsa-miR-1468-3p ctcatcATTTTGCca AGCAAAAU m7b Disrupted HPSEF_22673_G27446.1_4544678
hsa-miR-3662 ctcaTCATTTTgcca GAAAAUGA m7b Disrupted HPSEF_22673_G27446.1_4544678
hsa-miR-4470 ctcatcaGTTTGCCa UGGCAAAC m7b Created HPSEF_22673_G27446.1_4544678
hsa-miR-4502 cTCATCAGtttgcca GCUGAUGA m7b Created HPSEF_22673_G27446.1_4544678
hsa-miR-4698 ctcatCATTTTGcca UCAAAAUG m7b Disrupted HPSEF_22673_G27446.1_4544678

Mutation Mutation ID Sample Name Cancer Type
chr9:g.4544657G>A COSM4749041 pfg034T [stomach][NS][carcinoma][mixed_intestinal_and_diffuse_adenocarcinoma-unclassifiable]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-20a-3p ctAATGCAGatgctg ACUGCAUU m7b (m6b->m7b) HHFKP_147836_cluster-22645_4_8

Mutation Mutation ID Sample Name Cancer Type
chr9:g.4544656C>T COSM1643842 pfg016T [stomach][NS][adenocarcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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