SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0062020
Gene Symbol: SLC19A1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515845C>T COSM1165445 ML1 [large_intestine][colon][adenoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-128-1-5p gcccCGGCCCCGcag CGGGGCCG m8a Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-128-2-5p gcccCGGCCCCgcag GGGGGCCG m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4508 gccccgGCCCCGCag GCGGGGCU m7a Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4655-5p gCCCCGGTcccgcag CACCGGGG m7b Created HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4706 gccccggCCCCGCag AGCGGGGA m6b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-6781-5p gccCCGGCCCcgcag CGGGCCGG m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-744-5p gccccgGCCCCGCAg UGCGGGGC m8a Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-128-1-5p gcccCGGCCCCGcag CGGGGCCG m8a Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-128-2-5p gcccCGGCCCCgcag GGGGGCCG m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4508 gccccgGCCCCGCag GCGGGGCU m7a Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4655-5p gCCCCGGTcccgcag CACCGGGG m7b Created HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4706 gccccggCCCCGCag AGCGGGGA m6b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-6781-5p gccCCGGCCCcgcag CGGGCCGG m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-744-5p gccccgGCCCCGCAg UGCGGGGC m8a Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664

Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515825C>T COSM5006019 PASFXA [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][acute_lymphoblastic_B_cell_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-24-3p tgaattcCTGAGCCc UGGCUCAG m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-3664-3p tgaatTCCTGAGccc UCUCAGGA m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-3934-3p tgaattCCTGAGCcc UGCUCAGG m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-873-5p tgaaTTCCTGagccc GCAGGAAC m6b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-24-3p tgaattcCTGAGCCc UGGCUCAG m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-3664-3p tgaatTCCTGAGccc UCUCAGGA m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-3934-3p tgaattCCTGAGCcc UGCUCAGG m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-873-5p tgaaTTCCTGagccc GCAGGAAC m6b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664

Mutation Mutation ID Sample Name Cancer Type
chr21:g.45515812C>A COSM3363463 TCGA-CJ-4884-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193b-5p ccagtgaAAACCCCt CGGGGUUU m7b Created HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-323b-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-410-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4420 cCAGTGACaacccct GUCACUGA m7a Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-494-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-5096 ccaGTGAAAacccct GUUUCACC m6b Created HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-653-3p CCAGTGAAaacccct UUCACUGG m8a Created HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-668-3p ccAGTGACAacccct UGUCACUC m7a (m7a->m6a) HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-6755-3p ccagTGACAACccct UGUUGUCA m7b Disrupted HHHNA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-193b-5p ccagtgaAAACCCCt CGGGGUUU m7b Created HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-323b-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-410-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-4420 cCAGTGACaacccct GUCACUGA m7a Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-494-5p ccagtGACAACCcct AGGUUGUC m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-5096 ccaGTGAAAacccct GUUUCACC m6b Created HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-653-3p CCAGTGAAaacccct UUCACUGG m8a Created HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-668-3p ccAGTGACAacccct UGUCACUC m7a (m7a->m6a) HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664
hsa-miR-6755-3p ccagTGACAACccct UGUUGUCA m7b Disrupted HHHSA_15404_SLC19A1|NM_001205207|exon_CDS|-2.89543332614715|0.362804321949664

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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