SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000232
Gene Symbol: SGCB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028806C>T COSM397799 LUAD-S01346 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4728-3p tTCAGCATagactat CAUGCUGA m7b Created HPRT3_19232_G25689.1_52894994
hsa-miR-5008-3p ttcAGCACAGactat CCUGUGCU m7b Disrupted HPRT3_19232_G25689.1_52894994
hsa-miR-628-5p tTCAGCATagactat AUGCUGAC m7a Created HPRT3_19232_G25689.1_52894994
hsa-miR-6737-3p ttcAGCACAGActat UCUGUGCU m8a Disrupted HPRT3_19232_G25689.1_52894994
hsa-miR-7157-3p ttcAGCACAGActat UCUGUGCU m8a Disrupted HPRT3_19232_G25689.1_52894994

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52028081A>T COSM3946420 J46_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-653-3p tgctaCCAGTGAttt UUCACUGG m7b Disrupted HPRT3_19231_G25688.1_52894256
hsa-miR-513a-5p tgctaCCTGTGAttt UUCACAGG m7b Created HPRT3_19231_G25688.1_52894256
hsa-miR-34b-3p tgctaccAGTGATTt CAAUCACU m7b Disrupted HPRT3_19231_G25688.1_52894256

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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