SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001135592
Gene Symbol: RPS27A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.55235499T>C COSM1532043 TCGA-99-8033-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3591-3p gGGTGTTTatggcaa AAACACCA m7a Disrupted HPKMB_4378_G4981.1_55462638
hsa-miR-4659a-5p gggtgttCATGGCAa CUGCCAUG m7b Created HPKMB_4378_G4981.1_55462638
hsa-miR-4659b-5p gggtgttCATGGCAa UUGCCAUG m7b Created HPKMB_4378_G4981.1_55462638
hsa-miR-5590-5p gggtgttTATGGCAa UUGCCAUA m7b Disrupted HPKMB_4378_G4981.1_55462638

Mutation Mutation ID Sample Name Cancer Type
chr2:g.55235492G>A COSM4936845 TCGA-BC-A217-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3065-3p GGTGCTGAggtgttt UCAGCACC m8a Created HPKMB_4378_G4981.1_55462638

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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