SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000983
Gene Symbol: RPL22
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.6197694C>A COSM4940918 TCGA-DD-A4NE-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-5p ttgattGAACCCacc GGGGUUCC m6b Created HPRO6_5126_G6007.1_6257760
hsa-miR-4705 tTGATTGAacccacc UCAAUCAC m7a Created HPRO6_5126_G6007.1_6257760
hsa-miR-6741-5p ttgattGCACCCACc GUGGGUGC m8a Disrupted HPRO6_5126_G6007.1_6257760
hsa-miR-6748-5p ttgattgCACCCACc UGUGGGUG m7b Disrupted HPRO6_5126_G6007.1_6257760
hsa-miR-6793-5p ttgattgAACCCACc UGUGGGUU m7b Created HPRO6_5126_G6007.1_6257760

Mutation Mutation ID Sample Name Cancer Type
chr1:g.6197686C>A COSM3386269 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-139-5p acccaccCTGTAGAa UCUACAGU m7a Disrupted HPRO6_5126_G6007.1_6257760
hsa-miR-6756-5p aCCCACCCTgtagaa AGGGUGGG m8a (m8a->m7a) HPRO6_5126_G6007.1_6257760
hsa-miR-7151-3p acccacCCTGTAGaa CUACAGGC m7a Disrupted HPRO6_5126_G6007.1_6257760
hsa-miR-942-3p acccaCCATGTagaa CACAUGGC m6b Created HPRO6_5126_G6007.1_6257760

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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