SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001190411
Gene Symbol: RPH3AL
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.343804G>A COSN6654589 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1287-3p ttaGGCTAGAtaact CUCUAGCC m7b Created HHFCT_60874_cluster-9913_79_10
hsa-miR-5586-5p ttagGCTGGATAact UAUCCAGC m8a Disrupted HHFCT_60874_cluster-9913_79_10
hsa-miR-6512-3p ttaGGCTGGAtaact UUCCAGCC m7b Disrupted HHFCT_60874_cluster-9913_79_10
hsa-miR-6720-5p ttaGGCTGGAtaact UUCCAGCC m7b Disrupted HHFCT_60874_cluster-9913_79_10
hsa-miR-6849-3p ttAGGCTGGataact ACCAGCCU m7b (m7b->m6b) HHFCT_60874_cluster-9913_79_10

Mutation Mutation ID Sample Name Cancer Type
chr17:g.340766A>G COSN15114295 LP6007600 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6836-3p gggtgGGAGGCAgtg AUGCCUCC m7b Disrupted HHFKP_57658_cluster-9913_57_8
hsa-miR-6778-3p gggtGGGAGGCAgtg UGCCUCCC m8a Disrupted HHFKP_57658_cluster-9913_57_8
hsa-miR-1913 gggtggGGGGCAGtg UCUGCCCC m7b Created HHFKP_57658_cluster-9913_57_8
hsa-miR-324-3p gggtggGGGGCAGTg ACUGCCCC m8a Created HHFKP_57658_cluster-9913_57_8
hsa-miR-4313 gggtgGGGGGCagtg AGCCCCCU m6b Created HHFKP_57658_cluster-9913_57_8
hsa-miR-532-3p ggGTGGGAGGcagtg CCUCCCAC m8a Disrupted HHFKP_57658_cluster-9913_57_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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