SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001078170
Gene Symbol: RGPD2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.87784147T>G COSM3682751 SNUH_G15_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-138-1-3p aaacAAGTAGCactt GCUACUUC m7a Disrupted HPHES_4654_G6191.1_88083670
hsa-miR-6772-3p aaacaAGGAGCActt UUGCUCCU m7b Created HPHES_4654_G6191.1_88083670
hsa-miR-5089-3p aaacaAGTAGCActt AUGCUACU m7b Disrupted HPHES_4654_G6191.1_88083670
hsa-miR-4448 aaacAAGGAGCactt GGCUCCUU m7b Created HPHES_4654_G6191.1_88083670
hsa-miR-4268 aaacaAGGAGCactt GGCUCCUC m6b Created HPHES_4654_G6191.1_88083670
hsa-miR-138-1-3p aaacAAGTAGCactt GCUACUUC m7a Disrupted HPHES_4654_G6191.1_88083670
hsa-miR-6772-3p aaacaAGGAGCActt UUGCUCCU m7b Created HPHES_4654_G6191.1_88083670
hsa-miR-5089-3p aaacaAGTAGCActt AUGCUACU m7b Disrupted HPHES_4654_G6191.1_88083670
hsa-miR-4448 aaacAAGGAGCactt GGCUCCUU m7b Created HPHES_4654_G6191.1_88083670
hsa-miR-4268 aaacaAGGAGCactt GGCUCCUC m6b Created HPHES_4654_G6191.1_88083670

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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