SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001282899
Gene Symbol: RAPGEF4
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.173052368A>G COSN1806962 RK035_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1185-1-3p aaTGTATATagaata AUAUACAG m7a (m7a->m6a) HHFKP_84399_cluster-13241_8_32
hsa-miR-1185-2-3p aaTGTATATagaata AUAUACAG m7a (m7a->m6a) HHFKP_84399_cluster-13241_8_32
hsa-miR-190a-3p aatgTATATAGaata CUAUAUAU m7a Disrupted HHFKP_84399_cluster-13241_8_32

Mutation Mutation ID Sample Name Cancer Type
chr2:g.173036911G>C COSN1228863 HCC113T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6858-3p agcagcaGCTGGCTt CAGCCAGC m7b Disrupted HHFCT_91079_cluster-13241_8_16
hsa-miR-764 agcaGCACCTGgctt GCAGGUGC m7b Created HHFCT_91079_cluster-13241_8_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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