SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0087946
Gene Symbol: PTPN3
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr9:g.109438192A>G COSM3664000 HCC149T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4662a-3p ccaggCTATCTTTcc AAAGAUAG m8a Disrupted HHFKP_145827_cluster-23464_16_24

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109438186C>TC COSM1624406 HCC98T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3148 tatcTTTTCCgatagt UGGAAAAA m6b Created HHFKP_145827_cluster-23464_16_24
hsa-miR-5188 tatcttTCCGATagt AAUCGGAC m6b Disrupted HHFKP_145827_cluster-23464_16_24
hsa-miR-6124 tatCTTTTCCgatagt GGGAAAAG m7b Created HHFKP_145827_cluster-23464_16_24

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109438186C>A COSM1103764 TCGA-B5-A1MU-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5188 tatcttTCCGATagt AAUCGGAC m6b Disrupted HHFKP_145827_cluster-23464_16_24
hsa-miR-487b-3p tatcttTACGATagt AAUCGUAC m6b Created HHFKP_145827_cluster-23464_16_24

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser