SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002829
Gene Symbol: PTPN3
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.109463427C>T COSM1701508 YUAKER [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3974 aTGACCTTccggtta AAAGGUCA m7b Created HHFCT_158031_cluster-23464_7_14
hsa-miR-6799-5p atgACCTCCCggtta GGGGAGGU m7b Disrupted HHFCT_158031_cluster-23464_7_14
hsa-miR-6125 atgaCCTTCCGgtta GCGGAAGG m7b Created HHFCT_158031_cluster-23464_7_14
hsa-miR-493-3p atGACCTTCcggtta UGAAGGUC m7b (m6b->m7b) HHFCT_158031_cluster-23464_7_14
Mutation Mutation ID Sample Name Cancer Type
chr9:g.109463419C>T COSM284369 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109463415C>T COSM3786088 8015299 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.109463321C>T COSM3731770 255 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-3p tagATGGCGTggtac AACGCCAU m7b Disrupted HHFKP_145831_cluster-23464_20_192

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109463312G>A COSM3779531 TCGA-BT-A3PJ-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3974 tggtacaGACCTTTa AAAGGUCA m7a Disrupted HHFKP_145831_cluster-23464_20_192
hsa-miR-4464 tggtaCAAACCTTta AAGGUUUG m8a Created HHFKP_145831_cluster-23464_20_192
hsa-miR-4748 tggtaCAAACCTtta GAGGUUUG m7b Created HHFKP_145831_cluster-23464_20_192
hsa-miR-5087 tggtACAAACCttta GGGUUUGU m7b Created HHFKP_145831_cluster-23464_20_192
hsa-miR-6753-3p tggtACAGACCttta UGGUCUGU m7b Disrupted HHFKP_145831_cluster-23464_20_192
hsa-miR-7107-3p tggtACAGACCttta UGGUCUGU m7b Disrupted HHFKP_145831_cluster-23464_20_192

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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