SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145369
Gene Symbol: PTPN3
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.109426997G>A COSM5004393 PAPLDL [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][acute_lymphoblastic_B_cell_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-5p aggaaAAAAATGttc UCAUUUUU m7b Created HHHNA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892
hsa-miR-543 aggaaaaGAATGTTc AAACAUUC m7b Disrupted HHHNA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892
hsa-miR-627-3p agGAAAAGAatgttc UCUUUUCU m7a (m7a->m6a) HHHNA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892
hsa-miR-153-5p aggaaAAAAATGttc UCAUUUUU m7b Created HHHSA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892
hsa-miR-543 aggaaaaGAATGTTc AAACAUUC m7b Disrupted HHHSA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892
hsa-miR-627-3p agGAAAAGAatgttc UCUUUUCU m7a (m7a->m6a) HHHSA_22199_PTPN3|NM_001145372|exon_CDS|-5.13617068699452|1.110921320892

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422743C>T COSM76117 TCGA-13-1499-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1292-5p gccttctCGTTCCCc UGGGAACG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6770-5p gCCTTCTCgttcccc UGAGAAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422743C>A COSM1459230 TCGA-D5-6539-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1292-5p gccttctCGTTCCCc UGGGAACG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-4471 gccttctAGTTCCCc UGGGAACU m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-6770-5p gCCTTCTCgttcccc UGAGAAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-708-3p gcctTCTAGTTcccc CAACUAGA m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-8059 gccttctAGTTCCCc GGGGAACU m7b Created HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422742G>A COSM1459229 TCGA-AU-3779-01 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1292-5p ccttctCGTTCCCct UGGGAACG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6716-5p ccttctCATTCCCct UGGGAAUG m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-6770-5p CCTTCTCAttcccct UGAGAAGG m8a Created HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422739C>T COSM1222548 587220 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1249-5p tctcgttTCCCTCCc AGGAGGGA m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-1292-5p tctCGTTCCCctccc UGGGAACG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-5584-5p tctcgTTTCCCTccc CAGGGAAA m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-6783-5p tctcgTTCCCCTccc UAGGGGAA m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6797-5p tctcgttTCCCTCCc AGGAGGGA m7b Created HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422735T>C COSM3996224 TCGA-A4-A6HP-01 [kidney][NS][carcinoma][papillary_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-149-3p gttcCCCTCCCatta AGGGAGGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-30b-3p gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-328-5p gttcCCCCCCCatta GGGGGGGC m7a Created HHFCT_158030_cluster-23464_6_134
hsa-miR-3689a-3p gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-3689b-3p gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-3689c gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-4728-5p gttcCCCTCCCAtta UGGGAGGG m8a Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-625-5p gTTCCCCCcccatta AGGGGGAA m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-6779-5p gttccCCTCCCAtta CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6780a-5p gttccCCTCCCAtta UUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6783-5p gTTCCCCTcccatta UAGGGGAA m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6785-5p gttcCCCTCCCAtta UGGGAGGG m8a Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6799-5p gttccCCTCCCatta GGGGAGGU m6b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6871-5p gttcccCTCCCATta CAUGGGAG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6883-5p gttcCCCTCCCatta AGGGAGGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6885-5p gttccCCCCCCatta AGGGGGGC m6b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-7109-5p gttccCCCCCCAtta CUGGGGGG m7b Created HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422734C>T COSM3652760 TCGA-EE-A2MJ-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-149-3p ttcCCCTCCCattac AGGGAGGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-30b-3p ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-3179 ttCCCCTTCcattac AGAAGGGG m7b (m6b->m7b) HHFCT_158030_cluster-23464_6_134
hsa-miR-3202 ttcCCCTTCCAttac UGGAAGGG m8a Created HHFCT_158030_cluster-23464_6_134
hsa-miR-3689a-3p ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-3689b-3p ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-3689c ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-4506 ttcccctCCCATTac AAAUGGGU m6b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-4728-5p ttcCCCTCCCAttac UGGGAGGG m8a Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6779-5p ttccCCTCCCAttac CUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6780a-5p ttccCCTCCCAttac UUGGGAGG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6785-5p ttcCCCTCCCAttac UGGGAGGG m8a Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6799-5p ttccCCTCCCattac GGGGAGGU m6b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6871-5p ttcccCTCCCATtac CAUGGGAG m7b Disrupted HHFCT_158030_cluster-23464_6_134
hsa-miR-6883-5p ttcCCCTCCCattac AGGGAGGG m7b Disrupted HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109422718G>T COSM353617 LUAD_E00522 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-300 cccaaCTTGTATgtc UAUACAAG m7b Created HHFCT_158030_cluster-23464_6_134
hsa-miR-381-3p cccaaCTTGTATgtc UAUACAAG m7b Created HHFCT_158030_cluster-23464_6_134

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109410269G>A COSM3652757 TCGA-EE-A2GT-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1225-3p accaaagGGGGCTCc UGAGCCCC m7b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-1233-3p accaaagAGGGCTCc UGAGCCCU m7b Created HHFCT_158029_cluster-23464_5_12
hsa-miR-3943 accaaaGGGGGCTcc UAGCCCCC m7b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-4313 accaaAGGGGGCTcc AGCCCCCU m8a Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-4687-5p accaaaGAGGGCTcc CAGCCCUC m7b Created HHFCT_158029_cluster-23464_5_12
hsa-miR-9-5p ACCAAAGAgggctcc UCUUUGGU m8a Created HHFCT_158029_cluster-23464_5_12

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109410265C>T COSM3902915 TCGA-HU-A4GU-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1225-3p aagGGGGCTCcaccg UGAGCCCC m7b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-3943 aaGGGGGCTccaccg UAGCCCCC m7b (m7b->m6b) HHFCT_158029_cluster-23464_5_12
hsa-miR-4313 aAGGGGGCTccaccg AGCCCCCU m8a (m8a->m7a) HHFCT_158029_cluster-23464_5_12
hsa-miR-4640-3p aAGGGGGTtccaccg CACCCCCU m7b Created HHFCT_158029_cluster-23464_5_12
hsa-miR-505-5p aagggGGCTCCaccg GGGAGCCA m6b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-6880-5p aagggggCTCCACCg UGGUGGAG m7b Disrupted HHFCT_158029_cluster-23464_5_12

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109410262C>T COSM4467039 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4451 ggggCTCTACCgagg UGGUAGAG m7b Created HHFCT_158029_cluster-23464_5_12
hsa-miR-4732-5p gggGCTCTACcgagg UGUAGAGC m7b Created HHFCT_158029_cluster-23464_5_12
hsa-miR-505-5p ggGGCTCCaccgagg GGGAGCCA m6b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-6786-5p ggggctCCACCGagg GCGGUGGG m6b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-6880-5p ggggCTCCACCgagg UGGUGGAG m7b Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-8071 ggggcTCCACCGagg CGGUGGAC m7a Disrupted HHFCT_158029_cluster-23464_5_12
hsa-miR-8088 ggggctcTACCGAGg CCUCGGUA m7b Created HHFCT_158029_cluster-23464_5_12
Mutation Mutation ID Sample Name Cancer Type
chr9:g.109406567A>T COSM1635966 RK021_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.109406563G>A COSM4718966 T368 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4783-3p atcaatgACCGGGac CCCCGGUG m6b Created HPKTA_62634_G67790.1_112168842
hsa-miR-616-3p atCAATGACcgggac AGUCAUUG m7b (m6b->m7b) HPKTA_62634_G67790.1_112168842
hsa-miR-6850-3p atcaatGGCCGGGac CCCGGCCG m7a Disrupted HPKTA_62634_G67790.1_112168842
hsa-miR-4783-3p atcaatgACCGGGac CCCCGGUG m6b Created HPRO6_78046_G93615.1_112168837
hsa-miR-616-3p atCAATGACcgggac AGUCAUUG m7b (m6b->m7b) HPRO6_78046_G93615.1_112168837
hsa-miR-6850-3p atcaatGGCCGGGac CCCGGCCG m7a Disrupted HPRO6_78046_G93615.1_112168837
hsa-miR-4783-3p atcaatgACCGGGac CCCCGGUG m6b Created HPRT3_26327_G35199.1_112168842
hsa-miR-616-3p atCAATGACcgggac AGUCAUUG m7b (m6b->m7b) HPRT3_26327_G35199.1_112168842
hsa-miR-6850-3p atcaatGGCCGGGac CCCGGCCG m7a Disrupted HPRT3_26327_G35199.1_112168842
hsa-miR-4783-3p atcaatgACCGGGac CCCCGGUG m6b Created HPTA1_11519_G16550.1_112168839
hsa-miR-616-3p atCAATGACcgggac AGUCAUUG m7b (m6b->m7b) HPTA1_11519_G16550.1_112168839
hsa-miR-6850-3p atcaatGGCCGGGac CCCGGCCG m7a Disrupted HPTA1_11519_G16550.1_112168839
hsa-miR-4783-3p atcaatgACCGGGac CCCCGGUG m6b Created HPTA3_18999_G30766.1_112168836
hsa-miR-616-3p atCAATGACcgggac AGUCAUUG m7b (m6b->m7b) HPTA3_18999_G30766.1_112168836
hsa-miR-6850-3p atcaatGGCCGGGac CCCGGCCG m7a Disrupted HPTA3_18999_G30766.1_112168836

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109379561A>T COSM4453273 CSCC-11-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-708-3p ggatcCTAGTTaaga CAACUAGA m6b Disrupted HHHNA_22198_PTPN3|NM_001145368|exon_utr3|-4.90939243821459|3.09065014826239
hsa-miR-708-3p ggatcCTAGTTaaga CAACUAGA m6b Disrupted HHHSA_22198_PTPN3|NM_001145368|exon_utr3|-4.90939243821459|3.09065014826239

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109379404A>T COSN2305174 RK041_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5003-3p aGAAAAGTtatcgtg UACUUUUC m7b Created HHFCT_158028_cluster-23464_4_598
hsa-miR-5003-3p aGAAAAGTtatcgtg UACUUUUC m7b Created HHFKP_145821_cluster-23464_10_206

Mutation Mutation ID Sample Name Cancer Type
chr9:g.109379400C>T COSN1084706 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-338-5p aagATATTGTgtaca AACAAUAU m7b Created HHFCT_158028_cluster-23464_4_598
hsa-miR-4731-3p aagataTTGTGTaca CACACAAG m6b Created HHFCT_158028_cluster-23464_4_598
hsa-miR-338-5p aagATATTGTgtaca AACAAUAU m7b Created HHFKP_145821_cluster-23464_10_206
hsa-miR-4731-3p aagataTTGTGTaca CACACAAG m6b Created HHFKP_145821_cluster-23464_10_206

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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