SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001102668
Gene Symbol: PSMA4
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.78548860G>A COSM2011149 SNU-175 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3692-3p aaGTGGAACagttga GUUCCACA m7a (m6a->m7a) HHKTA_50618_NM_002789|858|897|1.34130617260447|11.4476094243317

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78548811G>C COSM349110 LUAD-YINHD [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1267 ctaaCAACAGagaat CCUGUUGA m6b Created HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-367-5p ctaaCAACAGagaat ACUGUUGC m6b Created HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-4768-5p ctaacaaGAGAGAAt AUUCUCUC m7b Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-6817-3p ctaacaAGAGAGAat UCUCUCUG m7a Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-6833-3p ctaacaaGAGAGAAt UUUCUCUC m7b Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-6873-3p ctaacaAGAGAGAAt UUCUCUCU m8a Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-7110-3p ctaacaAGAGAGAat UCUCUCUC m7a Disrupted HHRBC_4619_BC3-2of3-SCL_4201

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78548802C>T COSM4617613 C135 [large_intestine][right][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-3p atTGCAATactaaca CAUUGCAC m6b Created HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-3591-5p attgcaACACTAAca UUUAGUGU m7b Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-363-3p atTGCAATactaaca AAUUGCAC m6b Created HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-367-3p atTGCAATactaaca AAUUGCAC m6b Created HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-4255 attgcAACACTaaca CAGUGUUC m6b Disrupted HHRBC_4619_BC3-2of3-SCL_4201
hsa-miR-4684-3p aTTGCAACActaaca UGUUGCAA m8a (m8a->m7a) HHRBC_4619_BC3-2of3-SCL_4201

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78546676T>C COSM1374789 TCGA-A6-5665-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HHFCT_53975_cluster-7513_9_32
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HHFCT_53975_cluster-7513_9_32
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HHFCT_53975_cluster-7513_9_32
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HHFCT_53975_cluster-7513_9_32
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HHFCT_53975_cluster-7513_9_32
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HHFCT_53975_cluster-7513_9_32
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HPCB1_14119_G17775.1_78839013
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HPCB1_14119_G17775.1_78839013
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HPCB1_14119_G17775.1_78839013
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HPCB1_14119_G17775.1_78839013
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HPCB1_14119_G17775.1_78839013
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HPCB1_14119_G17775.1_78839013
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HPSEF_7972_G9566.1_78839017
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HPSEF_7972_G9566.1_78839017
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HPSEF_7972_G9566.1_78839017
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HPSEF_7972_G9566.1_78839017
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HPSEF_7972_G9566.1_78839017
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HPSEF_7972_G9566.1_78839017
hsa-miR-3660 tggaTGTCAGTaaac ACUGACAG m7a Created HPSLB_2656_G3197.1_78839014
hsa-miR-3913-3p tgGATGTCagtaaac AGACAUCA m6b Created HPSLB_2656_G3197.1_78839014
hsa-miR-4637 tggatGTTAGTAaac UACUAACU m7a Disrupted HPSLB_2656_G3197.1_78839014
hsa-miR-489-3p tgGATGTCAgtaaac GUGACAUC m7b (m6b->m7b) HPSLB_2656_G3197.1_78839014
hsa-miR-6719-3p tggATGTCAGtaaac UCUGACAU m7b Created HPSLB_2656_G3197.1_78839014
hsa-miR-888-3p tggaTGTCAGTaaac GACUGACA m7b Created HPSLB_2656_G3197.1_78839014

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78546648T>G COSM471115 TCGA-B0-4823-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-449c-3p ttagCTAGCAAagta UUGCUAGU m7a Created HHFCT_53975_cluster-7513_9_32
hsa-miR-621 ttaGCTAGCaaagta GGCUAGCA m6b Created HHFCT_53975_cluster-7513_9_32
hsa-miR-449c-3p ttagCTAGCAAagta UUGCUAGU m7a Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-621 ttaGCTAGCaaagta GGCUAGCA m6b Created HHRBL_5284_BCBL1-2of3-SCL_3740
hsa-miR-449c-3p ttagCTAGCAAagta UUGCUAGU m7a Created HPCB1_14119_G17775.1_78839013
hsa-miR-621 ttaGCTAGCaaagta GGCUAGCA m6b Created HPCB1_14119_G17775.1_78839013

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78544215A>T COSM1517763 TCGA-78-7153-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4633-5p ggcAGGCATAacttc AUAUGCCU m7b Disrupted HPCB3_7707_G10613.1_78836565
hsa-miR-532-5p ggcAGGCATaacttc CAUGCCUU m6b Disrupted HPCB3_7707_G10613.1_78836565
hsa-miR-596 gGCAGGCTTaacttc AAGCCUGC m8a (m7a->m8a) HPCB3_7707_G10613.1_78836565
hsa-miR-6894-3p gGCAGGCAtaacttc UUGCCUGC m7b Disrupted HPCB3_7707_G10613.1_78836565
hsa-miR-7109-3p ggcAGGCTTaacttc CAAGCCUC m6b Created HPCB3_7707_G10613.1_78836565
hsa-miR-4633-5p ggcAGGCATAacttc AUAUGCCU m7b Disrupted HPRO6_27244_G32119.1_78836567
hsa-miR-532-5p ggcAGGCATaacttc CAUGCCUU m6b Disrupted HPRO6_27244_G32119.1_78836567
hsa-miR-596 gGCAGGCTTaacttc AAGCCUGC m8a (m7a->m8a) HPRO6_27244_G32119.1_78836567
hsa-miR-6894-3p gGCAGGCAtaacttc UUGCCUGC m7b Disrupted HPRO6_27244_G32119.1_78836567
hsa-miR-7109-3p ggcAGGCTTaacttc CAAGCCUC m6b Created HPRO6_27244_G32119.1_78836567
hsa-miR-4633-5p ggcAGGCATAacttc AUAUGCCU m7b Disrupted HPSEF_7970_G9564.1_78836565
hsa-miR-532-5p ggcAGGCATaacttc CAUGCCUU m6b Disrupted HPSEF_7970_G9564.1_78836565
hsa-miR-596 gGCAGGCTTaacttc AAGCCUGC m8a (m7a->m8a) HPSEF_7970_G9564.1_78836565
hsa-miR-6894-3p gGCAGGCAtaacttc UUGCCUGC m7b Disrupted HPSEF_7970_G9564.1_78836565
hsa-miR-7109-3p ggcAGGCTTaacttc CAAGCCUC m6b Created HPSEF_7970_G9564.1_78836565

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78542635A>G COSM1708431 YUDUTY [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-340-5p aaTTTATAAactcaa UUAUAAAG m7a (m7a->m6a) HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317
hsa-miR-340-5p aaTTTATAAactcaa UUAUAAAG m7a (m7a->m6a) HPRO6_27243_G32118.1_78834978

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78542612T>C COSM4057145 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548u gatgaAGTCTTTttt CAAAGACU m7b Disrupted HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317
hsa-miR-7161-5p gatgaAGTCTTTttt UAAAGACU m7b Disrupted HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317
hsa-miR-8087 gatgAAGTCTTtttt GAAGACUU m7b Disrupted HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78542606A>C COSM117154 TCGA-04-1331-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-451b ctTCTTGCTgaagtc UAGCAAGA m7b (m6b->m7b) HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317
hsa-miR-545-3p cttcTTGCTGAagtc UCAGCAAA m7a Created HHKTA_19601_NM_002789|327|366|3.69940895992523|11.4476094243317

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78542486G>T COSM3701018 RK146_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4670-5p gtaGGTCGCTTatac AAGCGACC m8a Disrupted HHFCT_53970_cluster-7513_4_30
hsa-miR-769-5p gtAGGTCTCttatac UGAGACCU m7b (m6b->m7b) HHFCT_53970_cluster-7513_4_30
Mutation Mutation ID Sample Name Cancer Type
chr15:g.78542187A>G COSM4778821 RK233_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr15:g.78540490T>C COSN6642912 CHC320T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-5p tcttccgTGGAGTTa AACUCCAA m7a Disrupted HHFCT_53969_cluster-7513_1_37

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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