SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001172672
Gene Symbol: PNPLA4
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.7926085G>C COSM4544599 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8064 gcGTGTGCatttctg AGCACACU m6b Created HHFCT_164264_cluster-24181_6_15
hsa-miR-5680 gcgtgtgCATTTCTg GAGAAAUG m7b Created HHFCT_164264_cluster-24181_6_15
Mutation Mutation ID Sample Name Cancer Type
chrX:g.7922076A>T COSM267216 TCGA-AA-3672-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chrX:g.7902071C>T COSM3563650 TCGA-EE-A2MH-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6760-5p aTCTCCCTcttcagt CAGGGAGA m7b Created HHFKP_151556_cluster-24181_2_8
hsa-miR-6794-5p atcTCCCCCTtcagt CAGGGGGA m7b Disrupted HHFKP_151556_cluster-24181_2_8
hsa-miR-6864-5p atctccCCCTTCAgt UUGAAGGG m7b Disrupted HHFKP_151556_cluster-24181_2_8
hsa-miR-6870-5p atCTCCCCCttcagt UGGGGGAG m7b (m7b->m6b) HHFKP_151556_cluster-24181_2_8
hsa-miR-6873-5p atcTCCCTCTtcagt CAGAGGGA m7b Created HHFKP_151556_cluster-24181_2_8
hsa-miR-7111-5p atCTCCCCCttcagt UGGGGGAG m7b (m7b->m6b) HHFKP_151556_cluster-24181_2_8
hsa-miR-7515 atctccCCCTTCagt AGAAGGGA m6b Disrupted HHFKP_151556_cluster-24181_2_8
hsa-miR-4510 atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-4419a atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-3179 atctcCCCCTTCagt AGAAGGGG m7b Disrupted HHFKP_151556_cluster-24181_2_8
hsa-miR-4709-3p atctccCTCTTCAgt UUGAAGAG m7b Created HHFKP_151556_cluster-24181_2_8
hsa-miR-6133 atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-6130 atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-6129 atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-6127 atCTCCCTCttcagt UGAGGGAG m7b (m6b->m7b) HHFKP_151556_cluster-24181_2_8
hsa-miR-5698 atCTCCCCCttcagt UGGGGGAG m7b (m7b->m6b) HHFKP_151556_cluster-24181_2_8
hsa-miR-4723-5p atCTCCCCCttcagt UGGGGGAG m7b (m7b->m6b) HHFKP_151556_cluster-24181_2_8
hsa-miR-4716-3p atcTCCCCCTTcagt AAGGGGGA m8a Disrupted HHFKP_151556_cluster-24181_2_8

Mutation Mutation ID Sample Name Cancer Type
chrX:g.7902060C>T COSM3406615 TCGA-76-6664-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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