SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000935
Gene Symbol: PLOD2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160916G>A COSM4152982 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1912 tgTCTGGGTgcggac UACCCAGA m7b (m7b->m6b) HHHNA_16841_PLOD2|NM_000935|exon_CDS|-6.03328587249889|2.91209347914931
hsa-miR-500b-3p tgtCTGGGTGCggac GCACCCAG m8a Disrupted HHHNA_16841_PLOD2|NM_000935|exon_CDS|-6.03328587249889|2.91209347914931
hsa-miR-1295b-5p tgTCTGGGTGcggac CACCCAGA m8a Disrupted HHHNA_16841_PLOD2|NM_000935|exon_CDS|-6.03328587249889|2.91209347914931

Mutation Mutation ID Sample Name Cancer Type
chr3:g.146160913C>T COSM1318712 TCGA-AB-2857-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-500b-3p CTGGGTGCggactcg GCACCCAG m8a Disrupted HHHNA_16841_PLOD2|NM_000935|exon_CDS|-6.03328587249889|2.91209347914931

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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