SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0070473
Gene Symbol: PDLIM5
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640414G>A COSM1431855 TCGA-AZ-4315-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8068 gggaAACAAACtccg UGUUUGUU m7b Created HHFCT_119702_cluster-17248_46_14

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640388A>T COSM345666 LUAD-S01315 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-383-3p tgcaaAGTGCTGagc ACAGCACU m7b Created HHFCT_119702_cluster-17248_46_14
hsa-miR-6787-3p tgcaaagAGCTGAGc UCUCAGCU m7b Disrupted HHFCT_119702_cluster-17248_46_14

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640380G>C COSM4600790 WSU-HN30 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4325 cactttAGTGCAAag UUGCACUU m7a Disrupted HHFCT_119702_cluster-17248_46_14
hsa-miR-507 cactttaGTGCAAAg UUUUGCAC m7b Disrupted HHFCT_119702_cluster-17248_46_14
hsa-miR-545-5p cacTTTACTGcaaag UCAGUAAA m7b Created HHFCT_119702_cluster-17248_46_14
hsa-miR-557 cactttaGTGCAAAg GUUUGCAC m7b Disrupted HHFCT_119702_cluster-17248_46_14
hsa-miR-6516-5p cactttACTGCAAAg UUUGCAGU m8a Created HHFCT_119702_cluster-17248_46_14
hsa-miR-7703 cactttAGTGCAAag UUGCACUC m7a Disrupted HHFCT_119702_cluster-17248_46_14
hsa-miR-4325 cactttAGTGCAAag UUGCACUU m7a Disrupted HPRT3_18793_G25064.1_95561530
hsa-miR-507 cactttaGTGCAAAg UUUUGCAC m7b Disrupted HPRT3_18793_G25064.1_95561530
hsa-miR-545-5p cacTTTACTGcaaag UCAGUAAA m7b Created HPRT3_18793_G25064.1_95561530
hsa-miR-557 cactttaGTGCAAAg GUUUGCAC m7b Disrupted HPRT3_18793_G25064.1_95561530
hsa-miR-6516-5p cactttACTGCAAAg UUUGCAGU m8a Created HPRT3_18793_G25064.1_95561530
hsa-miR-7703 cactttAGTGCAAag UUGCACUC m7a Disrupted HPRT3_18793_G25064.1_95561530

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640365G>T COSM351090 LUAD-YINHD [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3614-5p gCCAAGTGaccagga CCACUUGG m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-4490 gccaagTTACCAGga UCUGGUAA m7b Created HHFKP_110686_cluster-17248_33_24
hsa-miR-5587-5p gccaaGTGACCAgga AUGGUCAC m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-6500-3p gcCAAGTGaccagga ACACUUGU m6b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-3614-5p gCCAAGTGaccagga CCACUUGG m7b Disrupted HPRT3_18793_G25064.1_95561530
hsa-miR-4490 gccaagTTACCAGga UCUGGUAA m7b Created HPRT3_18793_G25064.1_95561530
hsa-miR-5587-5p gccaaGTGACCAgga AUGGUCAC m7b Disrupted HPRT3_18793_G25064.1_95561530
hsa-miR-6500-3p gcCAAGTGaccagga ACACUUGU m6b Disrupted HPRT3_18793_G25064.1_95561530

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640353A>C COSM1310391 TCGA-G2-A2EJ-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3170 gggacAACCCCAGcc CUGGGGUU m8a Created HHFKP_110686_cluster-17248_33_24
hsa-miR-323b-5p ggGACAACCccagcc AGGUUGUC m7b (m6b->m7b) HHFKP_110686_cluster-17248_33_24
hsa-miR-410-5p ggGACAACCccagcc AGGUUGUC m7b (m6b->m7b) HHFKP_110686_cluster-17248_33_24
hsa-miR-4731-5p gggacaaCCCCAGCc UGCUGGGG m7b Created HHFKP_110686_cluster-17248_33_24
hsa-miR-494-5p ggGACAACCccagcc AGGUUGUC m7b (m6b->m7b) HHFKP_110686_cluster-17248_33_24
hsa-miR-5087 gggACAAACCCagcc GGGUUUGU m8a Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-5589-5p gggacaaACCCAGCc GGCUGGGU m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-6839-3p gggacAAACCCAgcc UUGGGUUU m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-6855-5p gggacAACCCCAgcc UUGGGGUU m7b Created HHFKP_110686_cluster-17248_33_24
hsa-miR-7155-5p gggacaACCCCAGcc UCUGGGGU m7b Created HHFKP_110686_cluster-17248_33_24

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640326G>A COSM2988997 DLD1 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1227-3p atcaGTGGCACcagc CGUGCCAC m7b Disrupted HHFCT_119701_cluster-17248_45_12
hsa-miR-4252 atCAGTGGCaccagc GGCCACUG m7b (m7b->m6b) HHFCT_119701_cluster-17248_45_12
hsa-miR-4420 aTCAGTGACaccagc GUCACUGA m8a (m7a->m8a) HHFCT_119701_cluster-17248_45_12
hsa-miR-548q atcagtgGCACCAGc GCUGGUGC m7b Disrupted HHFCT_119701_cluster-17248_45_12
hsa-miR-597-5p atcaGTGACACcagc UGUGUCAC m7b Created HHFCT_119701_cluster-17248_45_12
hsa-miR-7978 atcagtgACACCAGc UCUGGUGU m7b Created HHFCT_119701_cluster-17248_45_12
hsa-miR-1227-3p atcaGTGGCACcagc CGUGCCAC m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-4252 atCAGTGGCaccagc GGCCACUG m7b (m7b->m6b) HHFKP_110686_cluster-17248_33_24
hsa-miR-4420 aTCAGTGACaccagc GUCACUGA m8a (m7a->m8a) HHFKP_110686_cluster-17248_33_24
hsa-miR-548q atcagtgGCACCAGc GCUGGUGC m7b Disrupted HHFKP_110686_cluster-17248_33_24
hsa-miR-597-5p atcaGTGACACcagc UGUGUCAC m7b Created HHFKP_110686_cluster-17248_33_24
hsa-miR-7978 atcagtgACACCAGc UCUGGUGU m7b Created HHFKP_110686_cluster-17248_33_24

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640310T>G COSM1431854 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-562 gcGCTACTTactcag AAAGUAGC m7b (m7b->m6b) HHFCT_119701_cluster-17248_45_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640309CT>C COSM4188680 BK0076 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-562 agcGCTACTTactcag AAAGUAGC m7b Disrupted HHFCT_119701_cluster-17248_45_12
hsa-miR-6869-5p agcgctaCTACTCAg GUGAGUAG m7b Created HHFCT_119701_cluster-17248_45_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94640308A>G COSM4997882 PDA_004 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-503-5p cagCGCTGCTtactc UAGCAGCG m7b Created HHFCT_119701_cluster-17248_45_12
hsa-miR-562 cagcGCTACTTactc AAAGUAGC m7b Disrupted HHFCT_119701_cluster-17248_45_12
hsa-miR-646 cagcGCTGCTTactc AAGCAGCU m7a Created HHFCT_119701_cluster-17248_45_12
hsa-miR-6792-5p cagcgCTGCTTACtc GUAAGCAG m8a Created HHFCT_119701_cluster-17248_45_12
hsa-miR-6838-5p cagcGCTGCTTactc AAGCAGCA m7a Created HHFCT_119701_cluster-17248_45_12

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94618153T>C COSM1694694 YUWAND [skin][mucosal][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-566 actGGCGCCatcaag GGGCGCCU m6b Created HHFCT_119699_cluster-17248_43_8
hsa-miR-652-3p actgGCGCCATcaag AAUGGCGC m7b Created HHFCT_119699_cluster-17248_43_8
hsa-miR-6789-3p actGGCGCCatcaag CGGCGCCC m6b Created HHFCT_119699_cluster-17248_43_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser