SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0070464
Gene Symbol: PDLIM5
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.94455322G>A COSM1471791 TCGA-EJ-7314-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-28-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-3139 tggcccAGCTCCTtg UAGGAGCU m7b Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-3147 tgGCCCAACtccttg GGUUGGGC m7b (m6b->m7b) HHFCT_119660_cluster-17248_3_138
hsa-miR-4259 tggCCCAACTccttg CAGUUGGG m7b Created HHFCT_119660_cluster-17248_3_138
hsa-miR-4487 tggcCCAGCTCcttg AGAGCUGG m7b Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-571 tggcCCAACTCcttg UGAGUUGG m7b Created HHFCT_119660_cluster-17248_3_138
hsa-miR-708-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-28-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-3139 tggcccAGCTCCTtg UAGGAGCU m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-3147 tgGCCCAACtccttg GGUUGGGC m7b (m6b->m7b) HHFKP_110656_cluster-17248_2_21
hsa-miR-4259 tggCCCAACTccttg CAGUUGGG m7b Created HHFKP_110656_cluster-17248_2_21
hsa-miR-4487 tggcCCAGCTCcttg AGAGCUGG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-571 tggcCCAACTCcttg UGAGUUGG m7b Created HHFKP_110656_cluster-17248_2_21
hsa-miR-708-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-28-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-3139 tggcccAGCTCCTtg UAGGAGCU m7b Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-3147 tgGCCCAACtccttg GGUUGGGC m7b (m6b->m7b) HHFCT_119660_cluster-17248_3_138
hsa-miR-4259 tggCCCAACTccttg CAGUUGGG m7b Created HHFCT_119660_cluster-17248_3_138
hsa-miR-4487 tggcCCAGCTCcttg AGAGCUGG m7b Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-571 tggcCCAACTCcttg UGAGUUGG m7b Created HHFCT_119660_cluster-17248_3_138
hsa-miR-708-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFCT_119660_cluster-17248_3_138
hsa-miR-28-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-3139 tggcccAGCTCCTtg UAGGAGCU m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-3147 tgGCCCAACtccttg GGUUGGGC m7b (m6b->m7b) HHFKP_110656_cluster-17248_2_21
hsa-miR-4259 tggCCCAACTccttg CAGUUGGG m7b Created HHFKP_110656_cluster-17248_2_21
hsa-miR-4487 tggcCCAGCTCcttg AGAGCUGG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-571 tggcCCAACTCcttg UGAGUUGG m7b Created HHFKP_110656_cluster-17248_2_21
hsa-miR-708-5p tggcccAGCTCCTTg AAGGAGCU m8a Disrupted HHFKP_110656_cluster-17248_2_21

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94455299A>G COSM735268 TCGA-60-2715-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 agcaaCTACAGTGtg CACUGUAG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-17-3p agcaACTGCAGTgtg ACUGCAGU m8a Created HHFCT_119659_cluster-17248_2_22
hsa-miR-20b-3p agcaACTACAGTgtg ACUGUAGU m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-4418 agcaaCTGCAGTGtg CACUGCAG m8a Created HHFCT_119659_cluster-17248_2_22
hsa-miR-4703-3p agCAACTACAgtgtg UGUAGUUG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-509-3-5p agcaaCTGCAGTgtg UACUGCAG m7b Created HHFCT_119659_cluster-17248_2_22
hsa-miR-509-5p agcaaCTGCAGTgtg UACUGCAG m7b Created HHFCT_119659_cluster-17248_2_22
hsa-miR-1183 agcaaCTACAGTGtg CACUGUAG m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-17-3p agcaACTGCAGTgtg ACUGCAGU m8a Created HHFKP_110656_cluster-17248_2_21
hsa-miR-20b-3p agcaACTACAGTgtg ACUGUAGU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-4418 agcaaCTGCAGTGtg CACUGCAG m8a Created HHFKP_110656_cluster-17248_2_21
hsa-miR-4703-3p agCAACTACAgtgtg UGUAGUUG m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-509-3-5p agcaaCTGCAGTgtg UACUGCAG m7b Created HHFKP_110656_cluster-17248_2_21
hsa-miR-509-5p agcaaCTGCAGTgtg UACUGCAG m7b Created HHFKP_110656_cluster-17248_2_21

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94455297C>G COSM4185688 BK0008 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFCT_119659_cluster-17248_2_22
hsa-miR-1183 tgagcaaCTACAGTg CACUGUAG m7b Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-20b-3p tgagcaACTACAGTg ACUGUAGU m8a Disrupted HHFKP_110656_cluster-17248_2_21
hsa-miR-4703-3p tgagCAACTACAgtg UGUAGUUG m8a Disrupted HHFKP_110656_cluster-17248_2_21

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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