SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_019035
Gene Symbol: PCDH18
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531952G>T COSM3010941 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-3p atTGCAATactatca CAUUGCAC m6b Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-363-3p atTGCAATactatca AAUUGCAC m6b Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-367-3p atTGCAATactatca AAUUGCAC m6b Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-431-5p attGCAAGACtatca UGUCUUGC m7b Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-25-3p atTGCAATactatca CAUUGCAC m6b Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-363-3p atTGCAATactatca AAUUGCAC m6b Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-367-3p atTGCAATactatca AAUUGCAC m6b Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-431-5p attGCAAGACtatca UGUCUUGC m7b Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531950C>T COSM3600377 TCGA-EE-A3AA-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3161 tgcaagaTTATCAGa CUGAUAAG m7a Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-431-5p tGCAAGACtatcaga UGUCUUGC m7b Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-3161 tgcaagaTTATCAGa CUGAUAAG m7a Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-431-5p tGCAAGACtatcaga UGUCUUGC m7b Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531946C>T COSM1695023 YUWAND [skin][mucosal][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-3p agactaTCAGAGGat CCUCUGAA m7a Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-520f-5p agactaTTAGAGGat CCUCUAAA m7a Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-633 agACTATTAGaggat CUAAUAGU m8a Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-6780a-3p agactatCAGAGGAt CUCCUCUG m7b Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-146a-3p agactaTCAGAGGat CCUCUGAA m7a Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-520f-5p agactaTTAGAGGat CCUCUAAA m7a Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-633 agACTATTAGaggat CUAAUAGU m8a Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-6780a-3p agactatCAGAGGAt CUCCUCUG m7b Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531945A>T COSM585766 TCGA-44-3918-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-3p gactaTCAGAGGatg CCUCUGAA m7a Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-4330 gactATCTGAGGatg CCUCAGAU m8a Created HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-6780a-3p gactatCAGAGGAtg CUCCUCUG m7b Disrupted HHHNE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-146a-3p gactaTCAGAGGatg CCUCUGAA m7a Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-4330 gactATCTGAGGatg CCUCAGAU m8a Created HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652
hsa-miR-6780a-3p gactatCAGAGGAtg CUCCUCUG m7b Disrupted HHHSE_13215_PCDH18|NM_019035|exon_CDS|-4.51595726204|-1.34513129713652

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531545T>G COSM1427169 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-495-3p tgatTTTGTTaatat AAACAAAC m6b Created HPTK1_22522_G26956.1_138452691
hsa-miR-548c-3p tGATTTTTttaatat CAAAAAUC m7b Disrupted HPTK1_22522_G26956.1_138452691
hsa-miR-5688 tgatTTTGTTAatat UAACAAAC m7a Created HPTK1_22522_G26956.1_138452691
hsa-miR-7-1-3p tgatTTTGTTaatat CAACAAAU m6b Created HPTK1_22522_G26956.1_138452691
hsa-miR-7-2-3p tgatTTTGTTaatat CAACAAAU m6b Created HPTK1_22522_G26956.1_138452691
hsa-miR-8063 tGATTTTGttaatat UCAAAAUC m7b Created HPTK1_22522_G26956.1_138452691

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531537C>T COSM276620 TCGA-AA-A00N-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-16-2-3p ttAATATTGaggttc CCAAUAUU m7b (m6b->m7b) HPTK1_22522_G26956.1_138452691
hsa-miR-195-3p ttAATATTGaggttc CCAAUAUU m7b (m6b->m7b) HPTK1_22522_G26956.1_138452691
hsa-miR-3150a-5p ttaatatCGAGGTTc CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691
hsa-miR-3150b-5p ttaatatCGAGGTTc CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531537C>A COSM1291831 CLL048 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3150a-5p ttaatatCGAGGTTc CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691
hsa-miR-3150b-5p ttaatatCGAGGTTc CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531536G>A COSM3825223 TCGA-A8-A09Z-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3150a-5p taatatCGAGGTTcg CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691
hsa-miR-3150b-5p taatatCGAGGTTcg CAACCUCG m7b Disrupted HPTK1_22522_G26956.1_138452691

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137531529G>A COSM272017 TCGA-AA-3856-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3663-5p gaggttcAGACCAGg GCUGGUCU m7b Created HPTK1_22522_G26956.1_138452691
hsa-miR-4539 gagGTTCAGaccagg GCUGAACU m6b Created HPTK1_22522_G26956.1_138452691
hsa-miR-6503-5p gaggttCAGACCagg AGGUCUGC m6b Created HPTK1_22522_G26956.1_138452691
hsa-miR-7152-3p gaggttcGGACCAGg UCUGGUCC m7b Disrupted HPTK1_22522_G26956.1_138452691

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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