SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NR_130153
Gene Symbol: OTX1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056249T>A COSM193826 TCGA-AA-3555-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-382-5p tggaaacACAACTTc GAAGUUGU m7b Created HPKTA_33809_G36284.1_63283389
Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056222C>T COSM4514340 CSCC-45-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056220C>T COSM271445 TCGA-AA-3833-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1911-3p aGCCTGGTGccgctg CACCAGGC m8a (m7a->m8a) HHFCT_88562_uc002scd.1_2_126
hsa-miR-4733-3p agCCTGGTGccgctg CCACCAGG m7b (m6b->m7b) HHFCT_88562_uc002scd.1_2_126
hsa-miR-4755-3p aGCCTGGCgccgctg AGCCAGGC m7b Disrupted HHFCT_88562_uc002scd.1_2_126
hsa-miR-593-5p agccTGGTGCCgctg AGGCACCA m7b Created HHFCT_88562_uc002scd.1_2_126

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056139A>G COSM1408960 TCGA-AA-3815-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6884-3p ggtgGTGATGGtggt CCCAUCAC m7b Disrupted HPRO6_46135_G54639.1_63283272

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056123TGGC>C COSM4710592 T1772 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-5p gtggtggCCTGAGGa CCUCAGGG m7a Created HPRO6_46135_G54639.1_63283272
hsa-miR-15a-3p gtggtggTGGCCTGagga CAGGCCAU m7a Disrupted HPRO6_46135_G54639.1_63283272
hsa-miR-1972 gtggtggTGGCCTGAgga UCAGGCCA m8a Disrupted HPRO6_46135_G54639.1_63283272
hsa-miR-4717-5p gtggtgGTGGCCTgagga UAGGCCAC m7b Disrupted HPRO6_46135_G54639.1_63283272

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63056010G>A COSM4095100 TCGA-BR-6453-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3178 acctaGCGCCCatgc GGGGCGCG m6b Disrupted HHFKP_81764_uc002scd.1_1_83
hsa-miR-6741-5p acctaGCACCCAtgc GUGGGUGC m7b Created HHFKP_81764_uc002scd.1_1_83

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63055987G>A COSM3743858 RK119_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5581-3p tggcgGCATGGActg UUCCAUGC m7b Created HHFKP_81764_uc002scd.1_1_83
hsa-miR-6872-3p tggcGGCATGGactg CCCAUGCC m7b Created HHFKP_81764_uc002scd.1_1_83

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63055985G>A COSM477559 TCGA-BP-5176-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1181 tttGGCGACGtggac CCGUCGCC m7b Created HHFKP_81764_uc002scd.1_1_83

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63055983C>T COSM1022191 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser