SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001293557
Gene Symbol: NOD2
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.50716613G>A COSM3888619 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4312 tcagacCAAGGCatc GGCCUUGU m6b Created HPCB3_8433_G11605.1_50750536
hsa-miR-4527 tCAGACCAaggcatc UGGUCUGC m7a Created HPCB3_8433_G11605.1_50750536
hsa-miR-532-5p tcagaccAAGGCATc CAUGCCUU m7b Created HPCB3_8433_G11605.1_50750536
hsa-miR-6753-3p tCAGACCAaggcatc UGGUCUGU m7a Created HPCB3_8433_G11605.1_50750536
hsa-miR-6843-3p tcAGACCAaggcatc AUGGUCUC m6b Created HPCB3_8433_G11605.1_50750536
hsa-miR-6848-3p tcAGACCAaggcatc GUGGUCUC m6b Created HPCB3_8433_G11605.1_50750536
hsa-miR-7107-3p tCAGACCAaggcatc UGGUCUGU m7a Created HPCB3_8433_G11605.1_50750536

Mutation Mutation ID Sample Name Cancer Type
chr16:g.50716612C>T COSM4481139 CSCC-52-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4264 ctcaGACTGAGgcat ACUCAGUC m7b Created HPCB3_8433_G11605.1_50750536
hsa-miR-622 ctCAGACTGaggcat ACAGUCUG m7b (m6b->m7b) HPCB3_8433_G11605.1_50750536

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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