SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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Transcript ID: | NM_020873 |
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Gene Symbol: | LRRN1 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3846349T>C | COSM4117413 | TCGA-HU-A4GX-01 | [stomach][NS][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-511-3p | cataACACATactgc | AAUGUGUA | m6b | Created | HPHES_5242_G6959.1_3888023 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3846346A>C | COSM1422852 | TCGA-CM-5861-01 | [large_intestine][caecum][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3846341A>G | COSM4699278 | T3498 | [large_intestine][colon][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-1226-5p | aaCCCTCACataaca | GUGAGGGC | m7a | (m7a->m6a) | HPHES_5242_G6959.1_3888023 |
hsa-miR-381-5p | aacCCTCGCataaca | AGCGAGGU | m6b | Created | HPHES_5242_G6959.1_3888023 |
hsa-miR-4316 | aacCCTCACataaca | GGUGAGGC | m6b | Disrupted | HPHES_5242_G6959.1_3888023 |
hsa-miR-4501 | aacccTCACATAaca | UAUGUGAC | m7a | Disrupted | HPHES_5242_G6959.1_3888023 |
hsa-miR-4737 | aacCCTCGCATaaca | AUGCGAGG | m8a | Created | HPHES_5242_G6959.1_3888023 |
hsa-miR-6834-5p | aaCCCTCACataaca | GUGAGGGA | m7a | (m7a->m6a) | HPHES_5242_G6959.1_3888023 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3846337C>G | COSM4422962 | 2171659 | [central_nervous_system][medulla][glioma][astrocytoma_Grade_III] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-1226-5p | tgataaCCCTCACat | GUGAGGGC | m7a | Disrupted | HPHES_5242_G6959.1_3888023 |
hsa-miR-296-3p | tgatAACCCTCacat | GAGGGUUG | m7a | Disrupted | HPHES_5242_G6959.1_3888023 |
hsa-miR-4316 | tgataacCCTCACat | GGUGAGGC | m6b | Disrupted | HPHES_5242_G6959.1_3888023 |
hsa-miR-6834-5p | tgataaCCCTCACat | GUGAGGGA | m7a | Disrupted | HPHES_5242_G6959.1_3888023 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3844951C>A | COSM1537896 | TCGA-69-7980-01 | [lung][right_upper_lobe][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-1270 | ttTCTCCAaaaacaa | CUGGAGAU | m6b | Created | HPHES_5240_G6957.1_3886643 |
hsa-miR-1273h-5p | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-19a-5p | tttctccCAAAACaa | AGUUUUGC | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-19b-1-5p | tttctccCAAAACaa | AGUUUUGC | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-19b-2-5p | tttctccCAAAACaa | AGUUUUGC | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-2052 | tttctccCAAAACAa | UGUUUUGA | m7a | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-30b-3p | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-30c-1-3p | ttTCTCCCAaaacaa | CUGGGAGA | m7b | (m7b->m6b) | HPHES_5240_G6957.1_3886643 |
hsa-miR-30c-2-3p | ttTCTCCCAaaacaa | CUGGGAGA | m7b | (m7b->m6b) | HPHES_5240_G6957.1_3886643 |
hsa-miR-3122 | tttcTCCCAAaacaa | GUUGGGAC | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-3689a-3p | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-3689b-3p | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-3689c | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-3913-5p | tttcTCCCAAAacaa | UUUGGGAC | m7a | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-450a-1-3p | tttcTCCCAAaacaa | AUUGGGAA | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-4516 | tTTCTCCCaaaacaa | GGGAGAAG | m7a | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-620 | ttTCTCCAaaaacaa | AUGGAGAU | m6b | Created | HPHES_5240_G6957.1_3886643 |
hsa-miR-6513-5p | tttcTCCCAAAacaa | UUUGGGAU | m7a | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-6731-5p | ttTCTCCCAaaacaa | UGGGAGAG | m7a | (m7a->m6a) | HPHES_5240_G6957.1_3886643 |
hsa-miR-6779-5p | tttCTCCCAaaacaa | CUGGGAGG | m6b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-6780a-5p | tttCTCCCAAaacaa | UUGGGAGG | m7a | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-6788-5p | ttTCTCCCAaaacaa | CUGGGAGA | m7b | (m7b->m6b) | HPHES_5240_G6957.1_3886643 |
hsa-miR-6878-5p | tTTCTCCCaaaacaa | AGGGAGAA | m7b | Disrupted | HPHES_5240_G6957.1_3886643 |
hsa-miR-7850-5p | tttcTCCAAAaacaa | GUUUGGAC | m6b | Created | HPHES_5240_G6957.1_3886643 |
hsa-miR-8085 | ttTCTCCCAaaacaa | UGGGAGAG | m7a | (m7a->m6a) | HPHES_5240_G6957.1_3886643 |
hsa-miR-887-5p | tttCTCCCAAaacaa | CUUGGGAG | m7b | Disrupted | HPHES_5240_G6957.1_3886643 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3844763G>A | COSM321494 | 631084 | [lung][NS][carcinoma][small_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-211-3p | gaaattcGTCCCTGg | GCAGGGAC | m7b | Disrupted | HPHES_5239_G6956.1_3886437 |
hsa-miR-5187-5p | gaaatTCATCCCtgg | UGGGAUGA | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-6757-5p | gaaattCATCCCTgg | UAGGGAUG | m7b | Created | HPHES_5239_G6956.1_3886437 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3844762C>T | COSM1422813 | TCGA-CA-6718-01 | [large_intestine][colon][carcinoma][adenocarcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-3606-3p | tGAAATTTgtccctg | AAAAUUUC | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-513a-3p | tGAAATTTgtccctg | UAAAUUUC | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-513c-3p | tGAAATTTgtccctg | UAAAUUUC | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-7845-5p | tgaaattTGTCCCTg | AAGGGACA | m7b | Created | HPHES_5239_G6956.1_3886437 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3844756G>A | COSM3593638 | TCGA-FS-A4F5-06 | [skin][NS][malignant_melanoma][NS] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-130a-5p | cgtATGTGAAattcg | UUCACAUU | m7a | Disrupted | HPHES_5239_G6956.1_3886437 |
hsa-miR-23a-3p | cgtATGTGAaattcg | AUCACAUU | m6b | Disrupted | HPHES_5239_G6956.1_3886437 |
hsa-miR-23b-3p | cgtATGTGAaattcg | AUCACAUU | m6b | Disrupted | HPHES_5239_G6956.1_3886437 |
hsa-miR-23c | cgtATGTGAaattcg | AUCACAUU | m6b | Disrupted | HPHES_5239_G6956.1_3886437 |
hsa-miR-590-3p | cgtatgTAAAATTcg | UAAUUUUA | m7b | Created | HPHES_5239_G6956.1_3886437 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||
---|---|---|---|---|---|
chr3:g.3844750G>A | COSM2987092 | 537 | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | ||
miRNA Targets Table | |||||
miR ID | miRSite | miRSeed | SeedClass | FuncClass | Cluster ID |
hsa-miR-518a-5p | aCTTTGCAtatgtga | CUGCAAAG | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-527 | aCTTTGCAtatgtga | CUGCAAAG | m7b | Created | HPHES_5239_G6956.1_3886437 |
hsa-miR-5580-3p | actttgCATATGTGa | CACAUAUG | m8a | Created | HPHES_5239_G6956.1_3886437 |