SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001024611
Gene Symbol: LRRC66

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.52003347A>G COSM3409350 TCGA-28-2514-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-2-3p tcatTCAGTGGgata ACCACUGA m7b Created HPRT3_19229_G25685.1_52869504
hsa-miR-3156-3p tcattcAGTGGGAta CUCCCACU m7b Created HPRT3_19229_G25685.1_52869504
hsa-miR-1260b tcattcaGTGGGATa AUCCCACC m7a Created HPRT3_19229_G25685.1_52869504
hsa-miR-1260a tcattcaGTGGGATa AUCCCACC m7a Created HPRT3_19229_G25685.1_52869504

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52003332T>C COSM3300913 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-10b-5p ttgcaaACAGGGTgg UACCCUGU m7b Created HPRT3_19229_G25685.1_52869504
hsa-miR-10a-5p ttgcaaACAGGGTgg UACCCUGU m7b Created HPRT3_19229_G25685.1_52869504
hsa-miR-3620-3p ttgcaaaCAGGGTGg UCACCCUG m7b Created HPRT3_19229_G25685.1_52869504
hsa-miR-557 tTGCAAACagggtgg GUUUGCAC m7a Created HPRT3_19229_G25685.1_52869504

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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