SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_153371
Gene Symbol: LNX2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27547490T>C COSN1605046 RK115_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-30b-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-30c-1-3p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB1_11638_G14596.1_28121640
hsa-miR-30c-2-3p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB1_11638_G14596.1_28121640
hsa-miR-3689a-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-3689b-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-3689c taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-4461 taatcTCTCAATatt GAUUGAGA m7b Disrupted HPCB1_11638_G14596.1_28121640
hsa-miR-450a-1-3p taatcTCCCAATatt AUUGGGAA m7a Created HPCB1_11638_G14596.1_28121640
hsa-miR-6731-5p taaTCTCCCAatatt UGGGAGAG m7a Created HPCB1_11638_G14596.1_28121640
hsa-miR-6779-5p taatCTCCCAatatt CUGGGAGG m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-6788-5p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB1_11638_G14596.1_28121640
hsa-miR-6878-5p taaTCTCCCaatatt AGGGAGAA m6b Created HPCB1_11638_G14596.1_28121640
hsa-miR-8085 taaTCTCCCAatatt UGGGAGAG m7a Created HPCB1_11638_G14596.1_28121640
hsa-miR-887-5p taatCTCCCAAtatt CUUGGGAG m7b Created HPCB1_11638_G14596.1_28121640
hsa-miR-1273h-5p taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-30b-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-30c-1-3p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB3_6451_G8822.1_28121638
hsa-miR-30c-2-3p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB3_6451_G8822.1_28121638
hsa-miR-3689a-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-3689b-3p taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-3689c taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-4461 taatcTCTCAATatt GAUUGAGA m7b Disrupted HPCB3_6451_G8822.1_28121638
hsa-miR-450a-1-3p taatcTCCCAATatt AUUGGGAA m7a Created HPCB3_6451_G8822.1_28121638
hsa-miR-6731-5p taaTCTCCCAatatt UGGGAGAG m7a Created HPCB3_6451_G8822.1_28121638
hsa-miR-6779-5p taatCTCCCAatatt CUGGGAGG m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-6788-5p taaTCTCCCAatatt CUGGGAGA m7b Created HPCB3_6451_G8822.1_28121638
hsa-miR-6878-5p taaTCTCCCaatatt AGGGAGAA m6b Created HPCB3_6451_G8822.1_28121638
hsa-miR-8085 taaTCTCCCAatatt UGGGAGAG m7a Created HPCB3_6451_G8822.1_28121638
hsa-miR-887-5p taatCTCCCAAtatt CUUGGGAG m7b Created HPCB3_6451_G8822.1_28121638

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser