SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001098268
Gene Symbol: LIG4
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210314T>A COSM4970446 SJHGG034_D [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-586 tAATGCATtcaaagc UAUGCAUU m7b Disrupted HPSD3_2988_G4002.1_108862666
hsa-miR-5700 taATGCATTcaaagc UAAUGCAU m7b (m7b->m6b) HPSD3_2988_G4002.1_108862666

Mutation Mutation ID Sample Name Cancer Type
chr13:g.108210311A>T COSM432093 TCGA-A8-A07R-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1251-3p tgcattCAAAGCaga CGCUUUGC m6b Disrupted HPSD3_2988_G4002.1_108862666

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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