SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0061087
Gene Symbol: LAMA5
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.62325504G>A COSM1412936 TCGA-CM-6674-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1915-5p gtcccGCAAGGagct ACCUUGCC m6b Created HHFKP_88251_uc002ycq.1_12_30
hsa-miR-3124-5p gtCCCGCGAggagct UUCGCGGG m7b (m7b->m6b) HHFKP_88251_uc002ycq.1_12_30
hsa-miR-4268 gtcccgcGAGGAGCt GGCUCCUC m7b Disrupted HHFKP_88251_uc002ycq.1_12_30
hsa-miR-4448 gtcccgcAAGGAGCt GGCUCCUU m7b Created HHFKP_88251_uc002ycq.1_12_30
hsa-miR-502-5p gtcccGCAAGGAgct AUCCUUGC m7b Created HHFKP_88251_uc002ycq.1_12_30
hsa-miR-6841-3p gtcccGCAAGGagct ACCUUGCA m6b Created HHFKP_88251_uc002ycq.1_12_30

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62325486C>T COSM4991395 S06-38853-TP [skin][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-21-3p gaTGGTGTTGgccag CAACACCA m8a Created HHFKP_88251_uc002ycq.1_12_30
hsa-miR-29a-3p gaTGGTGCTggccag UAGCACCA m7b (m7b->m6b) HHFKP_88251_uc002ycq.1_12_30
hsa-miR-29b-3p gaTGGTGCTggccag UAGCACCA m7b (m7b->m6b) HHFKP_88251_uc002ycq.1_12_30
hsa-miR-29c-3p gaTGGTGCTggccag UAGCACCA m7b (m7b->m6b) HHFKP_88251_uc002ycq.1_12_30
hsa-miR-3065-3p gatGGTGCTGgccag UCAGCACC m7b Disrupted HHFKP_88251_uc002ycq.1_12_30
hsa-miR-3194-5p gatggtGCTGGCCag GGCCAGCC m7a Disrupted HHFKP_88251_uc002ycq.1_12_30
hsa-miR-3591-3p gaTGGTGTTggccag AAACACCA m7b (m6b->m7b) HHFKP_88251_uc002ycq.1_12_30
hsa-miR-4435 gatggtgCTGGCCAg AUGGCCAG m7b Disrupted HHFKP_88251_uc002ycq.1_12_30
hsa-miR-548s gatggtgTTGGCCAg AUGGCCAA m7b Created HHFKP_88251_uc002ycq.1_12_30
hsa-miR-767-5p gATGGTGCtggccag UGCACCAU m7b Disrupted HHFKP_88251_uc002ycq.1_12_30

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62325346C>T COSM4650546 SNU-175 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1908-5p gcctgtgCCCCGCCa CGGCGGGG m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-5090 gcctgTGCCCCGcca CCGGGGCA m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-663a gcctgtgCCCCGCCa AGGCGGGG m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6768-5p gCCTGTGTcccgcca CACACAGG m7b Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6775-5p gcctgTGCCCCGcca UCGGGGCA m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6787-5p gcctgtgCCCCGCCa UGGCGGGG m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-744-5p gcctgtGCCCCGCca UGCGGGGC m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-1908-5p gcctgtgCCCCGCCa CGGCGGGG m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-5090 gcctgTGCCCCGcca CCGGGGCA m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-663a gcctgtgCCCCGCCa AGGCGGGG m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6768-5p gCCTGTGTcccgcca CACACAGG m7b Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6775-5p gcctgTGCCCCGcca UCGGGGCA m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6787-5p gcctgtgCCCCGCCa UGGCGGGG m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-744-5p gcctgtGCCCCGCca UGCGGGGC m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62325342G>A COSM3405254 TCGA-41-2573-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-133a-5p gtgccccACCAGCTa AGCUGGUA m7a Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-138-5p gtgcccCACCAGCTa AGCUGGUG m8a Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-1908-5p gtgCCCCGCCagcta CGGCGGGG m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-3151-5p gtGCCCCACCagcta GGUGGGGC m8a Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4447 gtgCCCCACCagcta GGUGGGGG m7a Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4456 gtgccCCACCAGcta CCUGGUGG m7b Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4472 gtgCCCCACCagcta GGUGGGGG m7a Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-5090 gTGCCCCGccagcta CCGGGGCA m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-663a gtgCCCCGCCagcta AGGCGGGG m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6769a-5p gtgcCCCACCagcta AGGUGGGU m6b Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6775-5p gTGCCCCGccagcta UCGGGGCA m7b Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6787-5p gtgCCCCGCCAgcta UGGCGGGG m8a Disrupted HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-744-5p gtGCCCCGCcagcta UGCGGGGC m7b (m7b->m6b) HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-92a-2-5p gtgCCCCACCagcta GGGUGGGG m7b Created HHHNA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-133a-5p gtgccccACCAGCTa AGCUGGUA m7a Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-138-5p gtgcccCACCAGCTa AGCUGGUG m8a Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-1908-5p gtgCCCCGCCagcta CGGCGGGG m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-3151-5p gtGCCCCACCagcta GGUGGGGC m8a Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4447 gtgCCCCACCagcta GGUGGGGG m7a Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4456 gtgccCCACCAGcta CCUGGUGG m7b Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-4472 gtgCCCCACCagcta GGUGGGGG m7a Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-5090 gTGCCCCGccagcta CCGGGGCA m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-663a gtgCCCCGCCagcta AGGCGGGG m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6769a-5p gtgcCCCACCagcta AGGUGGGU m6b Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6775-5p gTGCCCCGccagcta UCGGGGCA m7b Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-6787-5p gtgCCCCGCCAgcta UGGCGGGG m8a Disrupted HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-744-5p gtGCCCCGCcagcta UGCGGGGC m7b (m7b->m6b) HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108
hsa-miR-92a-2-5p gtgCCCCACCagcta GGGUGGGG m7b Created HHHSA_14857_LAMA5|NM_005560|exon_CDS|-4.05876959990467|-0.72156423829108

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62325118G>A COSN6688251 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255a gcccCTCATCCgcct AGGAUGAG m7b Created HHFKP_88248_uc002ycq.1_9_547
hsa-miR-1255b-5p gcccCTCATCCGcct CGGAUGAG m8a Created HHFKP_88248_uc002ycq.1_9_547
hsa-miR-6734-5p gCCCCTCAtccgcct UUGAGGGG m7b Created HHFKP_88248_uc002ycq.1_9_547

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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