SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005559
Gene Symbol: LAMA1
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.6943264G>A COSM357547 LUAD-CHTN-3090416 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1247-5p tgttGACGGGaacgc ACCCGUCC m6b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-4421 tgttGACAGGaacgc ACCUGUCU m6b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-505-3p TGTTGACGggaacgc CGUCAACA m8a Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-5699-3p tgttGACAGGAacgc UCCUGUCU m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-6748-3p tgttGACAGGAacgc UCCUGUCC m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-7152-5p tgttgACAGGAAcgc UUUCCUGU m7b Created HHFCT_70097_cluster-10922_6_126

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6943263G>C COSM3821705 TCGA-AR-A5QQ-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1247-5p gttGACGGGaacgca ACCCGUCC m6b Disrupted HHFCT_70097_cluster-10922_6_126

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6943250C>T COSM4073124 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29a-3p cagtTGGTGCTgaaa UAGCACCA m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-29b-3p cagtTGGTGCTgaaa UAGCACCA m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-29c-3p cagtTGGTGCTgaaa UAGCACCA m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-3065-3p cagttGGTGCTGAaa UCAGCACC m8a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-383-3p cagttgGTGCTGaaa ACAGCACU m6b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-4291 cagttggTGCTGAAa UUCAGCAG m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-6871-3p cagttGGTGCTGaaa CAGCACCC m7a Created HHFCT_70097_cluster-10922_6_126

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6943249G>A COSM4697190 T2944 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148a-3p agttgGCACTGAaag UCAGUGCA m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-148b-3p agttgGCACTGAaag UCAGUGCA m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-152-3p agttgGCACTGAaag UCAGUGCA m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-30a-3p agttggcACTGAAAg CUUUCAGU m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-30d-3p agttggcACTGAAAg CUUUCAGU m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-30e-3p agttggcACTGAAAg CUUUCAGU m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-33b-3p agttGGCACTGaaag CAGUGCCU m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-4276 agttggCACTGAaag CUCAGUGA m6b Created HHFCT_70097_cluster-10922_6_126

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6943238A>G COSM564518 TCGA-49-6767-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a aaagtCCACACACcc GUGUGUGG m8a Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-147b aaagtCCGCACACcc GUGUGCGG m8a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-3650 aaagtccACACACCc AGGUGUGU m7b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-3911 aaagTCCACACAccc UGUGUGGA m8a Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-4754 aaaGTCCGCAcaccc AUGCGGAC m7b Created HHFCT_70097_cluster-10922_6_126
hsa-miR-4800-5p aaaGTCCACacaccc AGUGGACC m6b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-5009-5p aAAGTCCAcacaccc UUGGACUU m7b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-644a aaagtCCACACaccc AGUGUGGC m6b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-6833-5p aaagTCCACACaccc GUGUGGAA m7a Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-6850-5p aaagTCCGCACaccc GUGCGGAA m7a Created HHFCT_70097_cluster-10922_6_126
hsa-miR-6867-5p aaagtcCACACACcc UGUGUGUG m7b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-8058 aAAGTCCAcacaccc CUGGACUU m7b Disrupted HHFCT_70097_cluster-10922_6_126
hsa-miR-147a aaagtCCACACACcc GUGUGUGG m8a Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-147b aaagtCCGCACACcc GUGUGCGG m8a Created HHFKP_65817_cluster-10922_2_222
hsa-miR-3650 aaagtccACACACCc AGGUGUGU m7b Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-3911 aaagTCCACACAccc UGUGUGGA m8a Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-4754 aaaGTCCGCAcaccc AUGCGGAC m7b Created HHFKP_65817_cluster-10922_2_222
hsa-miR-4800-5p aaaGTCCACacaccc AGUGGACC m6b Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-5009-5p aAAGTCCAcacaccc UUGGACUU m7b Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-644a aaagtCCACACaccc AGUGUGGC m6b Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-6833-5p aaagTCCACACaccc GUGUGGAA m7a Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-6850-5p aaagTCCGCACaccc GUGCGGAA m7a Created HHFKP_65817_cluster-10922_2_222
hsa-miR-6867-5p aaagtcCACACACcc UGUGUGUG m7b Disrupted HHFKP_65817_cluster-10922_2_222
hsa-miR-8058 aAAGTCCAcacaccc CUGGACUU m7b Disrupted HHFKP_65817_cluster-10922_2_222

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6942160G>A COSM4966898 CPCG0364-F1 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-134-3p agagCCCACAGGtgc CCUGUGGG m8a Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-3620-5p agAGCCCACaggtgc GUGGGCUG m7a (m6a->m7a) HHFCT_70096_cluster-10922_4_2728
hsa-miR-4265 agaGCCCACAGgtgc CUGUGGGC m8a Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-4296 agaGCCCACAggtgc AUGUGGGC m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-4322 agaGCCCACAGgtgc CUGUGGGC m8a Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-4417 agAGCCCACaggtgc GGUGGGCU m7b (m6b->m7b) HHFCT_70096_cluster-10922_4_2728
hsa-miR-4674 aGAGCCCAcaggtgc CUGGGCUC m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-4734 agagCCCGCAGgtgc GCUGCGGG m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-4767 agaGCCCGCaggtgc CGCGGGCG m6b Disrupted HHFCT_70096_cluster-10922_4_2728

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6942155T>C COSM4073123 TCGA-IN-7806-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3130-3p ccgcaGGTGCAGtcc GCUGCACC m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-500a-3p ccgcAGGTGCAgtcc AUGCACCU m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-6720-3p ccgCAGGCGCagtcc CGCGCCUG m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-6804-3p ccgCAGGTGCagtcc CGCACCUG m7b Disrupted HHFCT_70096_cluster-10922_4_2728

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6942148C>T COSM340491 LUAD-F00365 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3169 tgCAGTCCTttgact UAGGACUG m7b (m7b->m6b) HHFCT_70096_cluster-10922_4_2728
hsa-miR-548u tgcAGTCTTTtgact CAAAGACU m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-7161-5p tgcAGTCTTTtgact UAAAGACU m7b Created HHFCT_70096_cluster-10922_4_2728

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6942142C>A COSM3145706 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4452 cctttGAATTCAgca UUGAAUUC m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-4680-3p cctttgAATTCAGca UCUGAAUU m7b Created HHFCT_70096_cluster-10922_4_2728

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6942136C>A COSM3821704 TCGA-A2-A3XW-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3182 acttCAGAAGagcgt GCUUCUGU m6b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-3194-3p acttcaGCAGAGCgt AGCUCUGC m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-3692-5p acttCAGCAGagcgt CCUGCUGG m6b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-4762-3p actTCAGAAGagcgt CUUCUGAU m7a Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-6071 acttCAGCAGAgcgt UUCUGCUG m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-6728-3p acttcAGCAGAGcgt UCUCUGCU m7b Disrupted HHFCT_70096_cluster-10922_4_2728
hsa-miR-6812-3p acttcagAAGAGCGt CCGCUCUU m7b Created HHFCT_70096_cluster-10922_4_2728
hsa-miR-93-3p actTCAGCAGagcgt ACUGCUGA m7b Disrupted HHFCT_70096_cluster-10922_4_2728

Mutation Mutation ID Sample Name Cancer Type
chr18:g.6941942G>A COSN7349332 8035591 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-30a-5p TGTTTACAttacact UGUAAACA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-30b-5p TGTTTACAttacact UGUAAACA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-30c-5p TGTTTACAttacact UGUAAACA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-30d-5p TGTTTACAttacact UGUAAACA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-30e-5p TGTTTACAttacact UGUAAACA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-4495 tgTTTACATTacact AAUGUAAA m8a Created HHFCT_70094_cluster-10922_1_178
hsa-miR-30a-5p TGTTTACAttacact UGUAAACA m8a Created HHFKP_65816_cluster-10922_1_520
hsa-miR-30b-5p TGTTTACAttacact UGUAAACA m8a Created HHFKP_65816_cluster-10922_1_520
hsa-miR-30c-5p TGTTTACAttacact UGUAAACA m8a Created HHFKP_65816_cluster-10922_1_520
hsa-miR-30d-5p TGTTTACAttacact UGUAAACA m8a Created HHFKP_65816_cluster-10922_1_520
hsa-miR-30e-5p TGTTTACAttacact UGUAAACA m8a Created HHFKP_65816_cluster-10922_1_520
hsa-miR-4495 tgTTTACATTacact AAUGUAAA m8a Created HHFKP_65816_cluster-10922_1_520

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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