SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_014394
Gene Symbol: GHITM
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.84145018T>C COSM1127993 TCGA-EJ-5522-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4715-3p tgGGTGGCAagtcag GUGCCACC m7b (m6b->m7b) HHRBL_2110_BCBL1-2of3-SCL_7898

Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144966A>C COSM4793156 TCGA-DD-A1EG-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4663 catagcaCTCAGCag AGCUGAGC m6b Created HHFCT_21718_uc001kcs.1_4_29
hsa-miR-8077 catagcACTCAGCag GGCUGAGU m7b Created HHFCT_21718_uc001kcs.1_4_29
hsa-miR-4663 catagcaCTCAGCag AGCUGAGC m6b Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-8077 catagcACTCAGCag GGCUGAGU m7b Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-4663 catagcaCTCAGCag AGCUGAGC m6b Created HHRBL_2110_BCBL1-2of3-SCL_7898
hsa-miR-8077 catagcACTCAGCag GGCUGAGU m7b Created HHRBL_2110_BCBL1-2of3-SCL_7898
Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144945A>G COSM920871 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144934G>T COSM361505 LUAD-CHTN-Z4716A [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-323b-3p gcagggaGTATTGGt CCCAAUAC m7b Disrupted HHFCT_21718_uc001kcs.1_4_29
hsa-miR-323b-3p gcagggaGTATTGGt CCCAAUAC m7b Disrupted HHFKP_20681_uc001kcs.1_4_68
hsa-miR-323b-3p gcagggaGTATTGGt CCCAAUAC m7b Disrupted HHRBL_2110_BCBL1-2of3-SCL_7898

Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144922A>T COSM685196 TCGA-66-2785-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4511 tatatGTTCTTagca GAAGAACU m6b Created HHFCT_21718_uc001kcs.1_4_29
hsa-miR-548b-3p tatatGTTCTTagca CAAGAACC m6b Created HHFCT_21718_uc001kcs.1_4_29
hsa-miR-4511 tatatGTTCTTagca GAAGAACU m6b Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-548b-3p tatatGTTCTTagca CAAGAACC m6b Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-4511 tatatGTTCTTagca GAAGAACU m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-548b-3p tatatGTTCTTagca CAAGAACC m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-4511 tatatGTTCTTagca GAAGAACU m6b Created HHRBL_2110_BCBL1-2of3-SCL_7898
hsa-miR-548b-3p tatatGTTCTTagca CAAGAACC m6b Created HHRBL_2110_BCBL1-2of3-SCL_7898
hsa-miR-4511 tatatGTTCTTagca GAAGAACU m6b Created HPTK1_4344_G5070.1_85904673
hsa-miR-548b-3p tatatGTTCTTagca CAAGAACC m6b Created HPTK1_4344_G5070.1_85904673

Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144912A>G COSM4016302 TCGA-BR-8361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295b-3p tcattccGCCTATat AAUAGGCC m6b Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-25-5p tcatTCCGCCTatat AGGCGGAG m7a Created HHFKP_20681_uc001kcs.1_4_68
hsa-miR-3165 tcatTCCACCTatat AGGUGGAU m7a Disrupted HHFKP_20681_uc001kcs.1_4_68
hsa-miR-6802-5p tcattCCACCTAtat CUAGGUGG m7b Disrupted HHFKP_20681_uc001kcs.1_4_68
hsa-miR-1295b-3p tcattccGCCTATat AAUAGGCC m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-25-5p tcatTCCGCCTatat AGGCGGAG m7a Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-3165 tcatTCCACCTatat AGGUGGAU m7a Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-6802-5p tcattCCACCTAtat CUAGGUGG m7b Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-1295b-3p tcattccGCCTATat AAUAGGCC m6b Created HPRO6_11047_G12724.1_85904676
hsa-miR-25-5p tcatTCCGCCTatat AGGCGGAG m7a Created HPRO6_11047_G12724.1_85904676
hsa-miR-3165 tcatTCCACCTatat AGGUGGAU m7a Disrupted HPRO6_11047_G12724.1_85904676
hsa-miR-6802-5p tcattCCACCTAtat CUAGGUGG m7b Disrupted HPRO6_11047_G12724.1_85904676
hsa-miR-1295b-3p tcattccGCCTATat AAUAGGCC m6b Created HPTK1_4344_G5070.1_85904673
hsa-miR-25-5p tcatTCCGCCTatat AGGCGGAG m7a Created HPTK1_4344_G5070.1_85904673
hsa-miR-3165 tcatTCCACCTatat AGGUGGAU m7a Disrupted HPTK1_4344_G5070.1_85904673
hsa-miR-6802-5p tcattCCACCTAtat CUAGGUGG m7b Disrupted HPTK1_4344_G5070.1_85904673

Mutation Mutation ID Sample Name Cancer Type
chr10:g.84144893C>G COSM539924 TCGA-75-6211-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-3p agtATGTGAaggata AUCACAUU m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-23b-3p agtATGTGAaggata AUCACAUU m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-23c agtATGTGAaggata AUCACAUU m6b Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-362-5p agtatgtCAAGGATa AAUCCUUG m7b Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-489-3p agtATGTCAaggata GUGACAUC m6b Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-500b-5p agtatgtCAAGGATa AAUCCUUG m7b Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-502-5p agtatgtCAAGGATa AUCCUUGC m7a Disrupted HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391
hsa-miR-6837-3p agtatGTGAAGGata CCUUCACU m7a Created HHKTA_33050_NM_014394|559|598|2.24993293469137|4.75325636666391

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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