SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001715
Gene Symbol: FARP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.98176592C>T COSM4048898 TCGA-FP-A4BE-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7847-3p tCCTCCACGaccgtt CGUGGAGG m8a (m8a->m7a) HPRO6_23813_G27920.1_98828858
hsa-miR-490-5p tccTCCATGaccgtt CCAUGGAU m6b Created HPRO6_23813_G27920.1_98828858
hsa-miR-4802-5p tCCTCCATgaccgtt UAUGGAGG m7b Created HPRO6_23813_G27920.1_98828858
hsa-miR-4440 tcctCCACGACcgtt UGUCGUGG m7b Disrupted HPRO6_23813_G27920.1_98828858

Mutation Mutation ID Sample Name Cancer Type
chr13:g.98176589C>T COSM4503779 CSCC-10-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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