SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001290360
Gene Symbol: EBF1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.158713035G>C COSM1543051 TCGA-69-7979-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4529-5p atGATGGCCgtgaat AGGCCAUC m7b (m6b->m7b) HHFCT_125905_uc010jip.1_40_8

Mutation Mutation ID Sample Name Cancer Type
chr5:g.158713034C>T COSM1292064 CLL086 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-377-3p tgatggGTGTGAatt AUCACACA m6b Created HHFCT_125905_uc010jip.1_40_8
hsa-miR-1228-3p tgatgGGTGTGAatt UCACACCU m7a Created HHFCT_125905_uc010jip.1_40_8
Mutation Mutation ID Sample Name Cancer Type
chr5:g.158713031G>A COSM3919508 TCGA-EE-A29S-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.158713026C>T COSM3613361 TCGA-EE-A29S-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7-2-3p gtgaATTTGTTcagt CAACAAAU m7b Created HHFCT_125905_uc010jip.1_40_8
hsa-miR-7-1-3p gtgaATTTGTTcagt CAACAAAU m7b Created HHFCT_125905_uc010jip.1_40_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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