SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000092
Gene Symbol: COL4A4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.227078053G>A COSM3727294 WM3211 [skin][ankle][malignant_melanoma][acral_lentiginous]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5572 gACCCCAAgtggtaa GUUGGGGU m7b Created HHFCT_86327_cluster-14147_22_27
hsa-miR-6765-3p gaccCCAGGTGgtaa UCACCUGG m7b Disrupted HHFCT_86327_cluster-14147_22_27
hsa-miR-6852-5p gaCCCCAGGtggtaa CCCUGGGG m7b (m7b->m6b) HHFCT_86327_cluster-14147_22_27
hsa-miR-7851-3p gacCCCAGGTggtaa UACCUGGG m7b Disrupted HHFCT_86327_cluster-14147_22_27
hsa-miR-1255b-2-3p gaccccAAGTGGTaa AACCACUU m7b Created HHFCT_86327_cluster-14147_22_27
hsa-miR-3614-5p gaccCCAAGTGGtaa CCACUUGG m8a Created HHFCT_86327_cluster-14147_22_27

Mutation Mutation ID Sample Name Cancer Type
chr2:g.227078049G>A COSM77507 TCGA-09-0364-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6765-3p CCAGGTGAtaaagga UCACCUGG m8a Created HHFCT_86327_cluster-14147_22_27
hsa-miR-374a-3p ccaggTGATAAagga CUUAUCAG m6b Created HHFCT_86327_cluster-14147_22_27

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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