SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0071719
Gene Symbol: CLPTM1L
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1324794C>T COSM3850109 TCGA-BR-7716-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-10a-3p agCGAATTTGagagg CAAAUUCG m8a Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-10b-3p agcGAATCTGagagg ACAGAUUC m7b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-371a-5p agcgaaTTTGAGagg ACUCAAAC m6b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-371b-5p agcgaaTTTGAGagg ACUCAAAA m6b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-372-5p agcgaATTTGAGagg CCUCAAAU m7b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-373-5p agcgaaTTTGAGagg ACUCAAAA m6b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-4330 agcgaATCTGAGagg CCUCAGAU m7b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-616-5p agcgaaTTTGAGagg ACUCAAAA m6b Created HHFKP_112372_cluster-18480_14_1035

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1324792G>A COSM1186732 LC_S28 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4330 cgaATCTGAGaggaa CCUCAGAU m7b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-4723-3p cgaatctGAGAGGaa CCCUCUCU m6b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-4760-5p cgAATCTAAgaggaa UUUAGAUU m7b (m6b->m7b) HHFKP_112372_cluster-18480_14_1035
hsa-miR-6769b-3p cgaatctGAGAGGaa CCCUCUCU m6b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-6881-3p cgaatctAAGAGGAa AUCCUCUU m7b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-7111-3p cgaatctGAGAGGAa AUCCUCUC m7b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-8061 cgAATCTAAGaggaa CUUAGAUU m8a Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-877-3p cgaatctAAGAGGAa UCCUCUUC m7a Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-376a-5p cGAATCTAagaggaa GUAGAUUC m7b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-3183 cgaatctGAGAGGaa GCCUCUCU m6b Disrupted HHFKP_112372_cluster-18480_14_1035

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1324773A>G COSM1695348 YUAKER [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-487b-3p gaggaGTACGATact AAUCGUAC m7b Disrupted HHFKP_112372_cluster-18480_14_1035
hsa-miR-106b-3p gaggAGTGCGatact CCGCACUG m6b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-483-3p gAGGAGTGcgatact UCACUCCU m7b Created HHFKP_112372_cluster-18480_14_1035

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1324765C>G COSM4390970 TCGA-AC-A5XS-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-16-1-3p cgATACTGaggtaag CCAGUAUU m6b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-4777-3p cgatacTGAGGTAag AUACCUCA m7b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-4797-3p cgaTACTGAGgtaag UCUCAGUA m7b Created HHFKP_112372_cluster-18480_14_1035
hsa-miR-544b cgataCTCAGGTaag ACCUGAGG m7a Disrupted HHFKP_112372_cluster-18480_14_1035

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser