SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_030782
Gene Symbol: CLPTM1L
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344443G>A COSM382904 LUAD-RT-S01810 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3177-5p tgagcgTGTACACca UGUGUACA m7b Disrupted HHFKP_112378_cluster-18480_20_327
hsa-miR-574-3p TGAGCGTGtacacca CACGCUCA m8a Disrupted HHFKP_112378_cluster-18480_20_327
hsa-miR-3177-5p tgagcgTGTACACca UGUGUACA m7b Disrupted HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-574-3p TGAGCGTGtacacca CACGCUCA m8a Disrupted HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3177-5p tgagcgTGTACACca UGUGUACA m7b Disrupted HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-574-3p TGAGCGTGtacacca CACGCUCA m8a Disrupted HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344433A>G COSM117375 TCGA-59-2348-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4440 caCCACGACgaggtc UGUCGUGG m7b (m7b->m6b) HHFKP_112378_cluster-18480_20_327
hsa-miR-4440 caCCACGACgaggtc UGUCGUGG m7b (m7b->m6b) HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-4440 caCCACGACgaggtc UGUCGUGG m7b (m7b->m6b) HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344400G>A COSM382903 LUAD-RT-S01810 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344393T>C COSM1060976 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3922-5p gacctGGCCTTGAat UCAAGGCC m8a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-4753-5p gaccTGGCCTTGaat CAAGGCCA m8a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-561-5p gacctggCCTTGAat AUCAAGGA m6b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3922-5p gacctGGCCTTGAat UCAAGGCC m8a Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-4753-5p gaccTGGCCTTGaat CAAGGCCA m8a Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-561-5p gacctggCCTTGAat AUCAAGGA m6b Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-3922-5p gacctGGCCTTGAat UCAAGGCC m8a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-4753-5p gaccTGGCCTTGaat CAAGGCCA m8a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-561-5p gacctggCCTTGAat AUCAAGGA m6b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3922-5p gacctGGCCTTGAat UCAAGGCC m8a Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-4753-5p gaccTGGCCTTGaat CAAGGCCA m8a Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-561-5p gacctggCCTTGAat AUCAAGGA m6b Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344392C>T COSM3850222 TCGA-BR-7851-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1323 acctgGTTTTGAatg UCAAAACU m7a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548aa accTGGTTTTgaatg AAAAACCA m7b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548ap-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548at-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548ay-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548o-3p acctgGTTTTGaatg CCAAAACU m6b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548t-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-1323 acctgGTTTTGAatg UCAAAACU m7a Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548aa accTGGTTTTgaatg AAAAACCA m7b Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548ap-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548at-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548ay-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548o-3p acctgGTTTTGaatg CCAAAACU m6b Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548t-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHNE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-1323 acctgGTTTTGAatg UCAAAACU m7a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548aa accTGGTTTTgaatg AAAAACCA m7b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548ap-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548at-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548ay-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548o-3p acctgGTTTTGaatg CCAAAACU m6b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-548t-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-1323 acctgGTTTTGAatg UCAAAACU m7a Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548aa accTGGTTTTgaatg AAAAACCA m7b Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548ap-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548at-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548ay-3p acctGGTTTTGaatg CAAAACCG m7a Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548o-3p acctgGTTTTGaatg CCAAAACU m6b Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
hsa-miR-548t-3p accTGGTTTTgaatg AAAAACCA m7b Created HHHSE_3920_CLPTM1L|NM_030782|exon_CDS|-6.44113272785886|-0.191441165815907
Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344391T>G COSM3608613 TCGA-BF-A1Q0-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344371T>C COSM735647 TCGA-43-5668-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.1344359A>C COSM4644632 LIM2551 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3671 agtccaaATTTGAaa AUCAAAUA m6b Disrupted HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3973 agtccaACTTTGaaa ACAAAGUA m6b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-520g-3p agtccaACTTTGaaa ACAAAGUG m6b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-520h agtccaACTTTGaaa ACAAAGUG m6b Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-561-3p agtccAACTTTGaaa CAAAGUUU m7a Created HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-607 agtccaaATTTGAAa GUUCAAAU m7b Disrupted HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-7850-5p aGTCCAAAtttgaaa GUUUGGAC m7b Disrupted HHHNA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3671 agtccaaATTTGAaa AUCAAAUA m6b Disrupted HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-3973 agtccaACTTTGaaa ACAAAGUA m6b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-520g-3p agtccaACTTTGaaa ACAAAGUG m6b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-520h agtccaACTTTGaaa ACAAAGUG m6b Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-561-3p agtccAACTTTGaaa CAAAGUUU m7a Created HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-607 agtccaaATTTGAAa GUUCAAAU m7b Disrupted HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653
hsa-miR-7850-5p aGTCCAAAtttgaaa GUUUGGAC m7b Disrupted HHHSA_17666_CLPTM1L|NM_030782|exon_CDS|-6.0410877564677|1.02906393446653

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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