SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001185056
Gene Symbol: CLDN11
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.170432714G>A COSM4115169 TCGA-BR-8296-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-17-3p acACTGCAGgctcta ACUGCAGU m7b (m6b->m7b) HPCB3_15617_G21417.1_170150494
hsa-miR-596 acactGCAGGCTcta AAGCCUGC m7b Created HPCB3_15617_G21417.1_170150494

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170423239T>C COSM1420571 TCGA-CM-4743-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4773 tgctgaCTGTTCTtc CAGAACAG m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-212-3p tgctGACTGTTcttc UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-132-3p tgctGACTGTTcttc UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170423238C>T COSM39961 Br27P [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-132-3p ctgctGACTGTTctt UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-212-3p ctgctGACTGTTctt UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-34a-3p ctGCTGATTGttctt CAAUCAGC m8a Created HPCB3_15616_G21416.1_170141018
hsa-miR-3617-3p cTGCTGATtgttctt CAUCAGCA m7b Created HPCB3_15616_G21416.1_170141018
hsa-miR-4773 ctgctgaCTGTTCTt CAGAACAG m7b Disrupted HPCB3_15616_G21416.1_170141018

Mutation Mutation ID Sample Name Cancer Type
chr3:g.170423237A>G COSM1420570 TCGA-AZ-6603-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4291 gCTGCTGActgttct UUCAGCAG m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-212-3p gctgctGACTGTTct UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-132-3p gctgctGACTGTTct UAACAGUC m7b Disrupted HPCB3_15616_G21416.1_170141018
hsa-miR-6858-3p gctGCTGGCTGttct CAGCCAGC m8a Created HPCB3_15616_G21416.1_170141018

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser