SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0048611
Gene Symbol: CHAF1A
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428822C>T COSM4468286 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3974 aaGACCTTaaaggcc AAAGGUCA m6b Created HHFKP_71893_uc002mal.1_11_12
hsa-miR-4477b aagaCCTTAAaggcc AUUAAGGA m6b Created HHFKP_71893_uc002mal.1_11_12
hsa-miR-7856-5p aagaCCTTAAAggcc UUUUAAGG m7b Created HHFKP_71893_uc002mal.1_11_12
Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428822C>G COSM3797195 TCGA-DK-A3IU-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428810C>T COSM3535330 TCGA-EE-A29S-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p tctccTTTTTGaaag ACAAAAAA m6b Created HHFKP_71893_uc002mal.1_11_12
hsa-miR-607 tctccttTTTGAAag GUUCAAAU m6b Created HHFKP_71893_uc002mal.1_11_12

Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428806C>T COSM3535329 TCGA-EE-A2M5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-5p gAGTTCTCcttcttg UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-146b-5p gAGTTCTCcttcttg UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-3185 gagttCTTCTTCTtg AGAAGAAG m8a Created HHFKP_71893_uc002mal.1_11_12
hsa-miR-4428 gagtTCTCCTTcttg CAAGGAGA m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-4511 gAGTTCTTCttcttg GAAGAACU m8a (m7a->m8a) HHFKP_71893_uc002mal.1_11_12
hsa-miR-7153-5p gAGTTCTCcttcttg UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12

Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428804C>A COSM997707 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-5p gcgAGTTCTCcttct UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-146b-5p gcgAGTTCTCcttct UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-4428 gcgagtTCTCCTTct CAAGGAGA m7b Disrupted HHFKP_71893_uc002mal.1_11_12
hsa-miR-7153-5p gcgAGTTCTCcttct UGAGAACU m7b Disrupted HHFKP_71893_uc002mal.1_11_12

Mutation Mutation ID Sample Name Cancer Type
chr19:g.4428799G>A COSM3289331 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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